Analysis of interatomic Contacts of Structural Units in PDB entry:
1M93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M93 entry

There are 3 chains in PDB entry 1M93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 46
B
 ASP 56LEU 300
C
 THR 309THR 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1M93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 11Right-handed alpha
Helix 2
2
A
19 34Right-handed alpha
Helix 3
3
A
35 44Right-handed alpha
Helix 4
4
B
74 82Right-handed alpha
Helix 5
5
B
93 107Right-handed alpha
Helix 6
6
B
142 146Right-handed 310
Helix 7
7
B
206 212Right-handed alpha
Helix 8
8
B
215 225Right-handed alpha
Helix 9
9
B
246 253Right-handed alpha
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There are 3 sheets in PDB entry 1M93. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
C
329 335anti-parallel
Strand 3
C
318 324anti-parallel
Strand 4
B
194 201anti-parallel
Strand 5
B
183 189anti-parallel
Strand 6
B
170 176anti-parallel
Strand 7
B
227 230anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
59 68parallel
Strand 3
B
125 136anti-parallel
Strand 4
B
290 299anti-parallel
Strand 5
B
278 286anti-parallel
Strand 6
B
238 245anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 154first strand
Strand 2
B
157 166anti-parallel
Strand 3
B
232 236anti-parallel
Strand 4
C
311 313parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il