Analysis of interatomic Contacts of Structural Units in PDB entry:
1M9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M9V entry

There are 2 chains in PDB entry 1M9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLU 411
B
 SER 412GLU 822
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1M9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 21Right-handed alpha
Helix 2
2
A
35 45Right-handed alpha
Helix 3
3
A
53 64Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
80 91Right-handed alpha
Helix 6
6
A
99 110Right-handed alpha
Helix 7
7
A
137 139Right-handed 310
Helix 8
8
A
140 152Right-handed alpha
Helix 9
9
A
169 189Right-handed alpha
Helix 10
10
A
242 244Right-handed 310
Helix 11
11
A
249 265Right-handed alpha
Helix 12
12
A
280 285Right-handed alpha
Helix 13
13
A
317 319Right-handed 310
Helix 14
14
A
320 326Right-handed alpha
Helix 15
15
A
396 400Right-handed 310
Helix 16
16
B
418 432Right-handed alpha
Helix 17
17
B
442 444Right-handed 310
Helix 18
18
B
446 456Right-handed alpha
Helix 19
19
B
464 475Right-handed alpha
Helix 20
20
B
479 481Right-handed 310
Helix 21
21
B
491 502Right-handed alpha
Helix 22
22
B
510 521Right-handed alpha
Helix 23
23
B
548 550Right-handed 310
Helix 24
24
B
551 563Right-handed alpha
Helix 25
25
B
580 600Right-handed alpha
Helix 26
26
B
627 631Right-handed 310
Helix 27
27
B
653 655Right-handed 310
Helix 28
28
B
661 676Right-handed alpha
Helix 29
29
B
689 696Right-handed alpha
Helix 30
30
B
728 730Right-handed 310
Helix 31
31
B
731 736Right-handed alpha
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There are 11 sheets in PDB entry 1M9V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 408first strand
Strand 2
A
2 6parallel
Strand 3
A
287 297anti-parallel
Strand 4
A
308 311anti-parallel
Strand 5
A
353 357parallel
Strand 6
A
365 370anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 408first strand
Strand 2
A
2 6parallel
Strand 3
A
287 297anti-parallel
Strand 4
A
380 383anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
25 28parallel
Strand 3
A
273 276parallel
Strand 4
A
195 197parallel
Strand 5
A
155 159parallel
Strand 6
A
114 118parallel
Strand 7
A
94 97parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 214first strand
Strand 2
A
228 233anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
245 248anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
791 795first strand
Strand 2
B
698 708anti-parallel
Strand 3
B
413 417anti-parallel
Strand 4
B
815 819parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
791 795first strand
Strand 2
B
698 708anti-parallel
Strand 3
B
719 722anti-parallel
Strand 4
B
761 768parallel
Strand 5
B
776 784anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 440first strand
Strand 2
B
459 461parallel
Strand 3
B
483 485parallel
Strand 4
B
505 508parallel
Strand 5
B
525 529parallel
Strand 6
B
566 570parallel
Strand 7
B
606 608parallel
Strand 8
B
684 687parallel
Strand 9
B
436 440parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
620 625first strand
Strand 2
B
639 644anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
649 652first strand
Strand 2
B
656 659anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
807 808first strand
Strand 2
B
811 812anti-parallel
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