Analysis of interatomic Contacts of Structural Units in PDB entry:
1MB2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MB2 entry

There are 6 chains in PDB entry 1MB2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 326
B
 MET 1ARG 326
C
 MET 1ARG 326
D
 MET 1ARG 326
E
 MET 1ARG 326
F
 MET 1ARG 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 1MB2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
22 33Right-handed alpha
Helix 3
3
A
42 47Right-handed 310
Helix 4
4
A
50 69Right-handed alpha
Helix 5
5
A
81 83Right-handed 310
Helix 6
6
A
84 95Right-handed alpha
Helix 7
7
A
98 104Right-handed alpha
Helix 8
10
A
147 166Right-handed alpha
Helix 9
11
A
199 203Right-handed 310
Helix 10
12
A
209 220Right-handed alpha
Helix 11
13
A
235 250Right-handed alpha
Helix 12
14
A
252 260Right-handed alpha
Helix 13
15
A
264 293Right-handed alpha
Helix 14
16
A
294 323Right-handed alpha
Helix 15
17
B
15 22Right-handed alpha
Helix 16
18
B
22 30Right-handed alpha
Helix 17
19
B
40 45Right-handed alpha
Helix 18
20
B
50 69Right-handed alpha
Helix 19
21
B
81 83Right-handed 310
Helix 20
22
B
84 94Right-handed alpha
Helix 21
23
B
98 104Right-handed alpha
Helix 22
26
B
147 166Right-handed alpha
Helix 23
27
B
209 219Right-handed alpha
Helix 24
28
B
235 250Right-handed alpha
Helix 25
29
B
252 260Right-handed alpha
Helix 26
30
B
264 293Right-handed alpha
Helix 27
31
B
294 323Right-handed alpha
Helix 28
32
C
15 22Right-handed alpha
Helix 29
33
C
22 30Right-handed alpha
Helix 30
34
C
40 45Right-handed alpha
Helix 31
35
C
50 69Right-handed alpha
Helix 32
36
C
81 83Right-handed 310
Helix 33
37
C
84 95Right-handed alpha
Helix 34
38
C
98 105Right-handed alpha
Helix 35
41
C
125 135Right-handed alpha
Helix 36
42
C
147 166Right-handed alpha
Helix 37
43
C
199 203Right-handed 310
Helix 38
44
C
209 220Right-handed alpha
Helix 39
45
C
235 250Right-handed alpha
Helix 40
46
C
252 260Right-handed alpha
Helix 41
47
C
264 293Right-handed alpha
Helix 42
48
C
294 323Right-handed alpha
Helix 43
49
D
15 22Right-handed alpha
Helix 44
50
D
22 30Right-handed alpha
Helix 45
51
D
42 47Right-handed 310
Helix 46
52
D
50 69Right-handed alpha
Helix 47
53
D
84 95Right-handed alpha
Helix 48
54
D
98 104Right-handed alpha
Helix 49
57
D
147 166Right-handed alpha
Helix 50
58
D
199 203Right-handed 310
Helix 51
59
D
209 220Right-handed alpha
Helix 52
60
D
235 250Right-handed alpha
Helix 53
61
D
252 260Right-handed alpha
Helix 54
62
D
264 293Right-handed alpha
Helix 55
63
D
294 323Right-handed alpha
Helix 56
64
E
15 22Right-handed alpha
Helix 57
65
E
25 33Right-handed alpha
Helix 58
66
E
40 45Right-handed alpha
Helix 59
67
E
50 69Right-handed alpha
Helix 60
68
E
81 83Right-handed 310
Helix 61
69
E
84 95Right-handed alpha
Helix 62
70
E
98 105Right-handed alpha
Helix 63
73
E
144 146Right-handed 310
Helix 64
74
E
147 166Right-handed alpha
Helix 65
75
E
199 203Right-handed 310
Helix 66
76
E
209 220Right-handed alpha
Helix 67
77
E
235 250Right-handed alpha
Helix 68
78
E
252 260Right-handed alpha
Helix 69
79
E
264 293Right-handed alpha
Helix 70
80
E
294 323Right-handed alpha
Helix 71
81
F
15 22Right-handed alpha
Helix 72
82
F
22 30Right-handed alpha
Helix 73
83
F
40 45Right-handed alpha
Helix 74
84
F
50 69Right-handed alpha
Helix 75
85
F
81 83Right-handed 310
Helix 76
86
F
84 95Right-handed alpha
Helix 77
87
F
98 104Right-handed alpha
Helix 78
90
F
147 166Right-handed alpha
Helix 79
91
F
199 203Right-handed 310
Helix 80
92
F
209 220Right-handed alpha
Helix 81
93
F
235 250Right-handed alpha
Helix 82
94
F
252 260Right-handed alpha
Helix 83
95
F
264 293Right-handed alpha
Helix 84
96
F
294 323Right-handed alpha
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There are 10 sheets in PDB entry 1MB2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
34 39parallel
Strand 3
A
76 79parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
173 175parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
34 39parallel
Strand 3
B
76 79parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
34 39parallel
Strand 3
C
76 79parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
34 39parallel
Strand 3
D
76 79parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 141first strand
Strand 2
D
173 174parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 8first strand
Strand 2
E
34 39parallel
Strand 3
E
76 79parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 141first strand
Strand 2
E
173 174parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 8first strand
Strand 2
F
34 39parallel
Strand 3
F
76 79parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
140 141first strand
Strand 2
F
173 174parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il