Analysis of interatomic Contacts of Structural Units in PDB entry:
1MB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MB4 entry

There are 2 chains in PDB entry 1MB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 369
B
 MET 1GLU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 1MB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
24 29Right-handed 310
Helix 3
3
A
58 63Right-handed alpha
Helix 4
4
A
73 87Right-handed alpha
Helix 5
5
A
110 124Right-handed alpha
Helix 6
6
A
133 149Right-handed alpha
Helix 7
7
A
162 166Right-handed 310
Helix 8
8
A
167 190Right-handed alpha
Helix 9
9
A
195 209Right-handed alpha
Helix 10
10
A
238 253Right-handed alpha
Helix 11
11
A
287 297Right-handed alpha
Helix 12
12
A
308 316Right-handed alpha
Helix 13
13
A
317 322Right-handed alpha
Helix 14
14
A
355 369Right-handed alpha
Helix 15
15
B
10 23Right-handed alpha
Helix 16
16
B
24 28Right-handed 310
Helix 17
17
B
58 63Right-handed alpha
Helix 18
18
B
73 87Right-handed alpha
Helix 19
19
B
110 123Right-handed alpha
Helix 20
20
B
133 149Right-handed alpha
Helix 21
21
B
162 166Right-handed 310
Helix 22
22
B
167 191Right-handed alpha
Helix 23
23
B
195 209Right-handed alpha
Helix 24
24
B
238 253Right-handed alpha
Helix 25
25
B
287 297Right-handed alpha
Helix 26
26
B
308 316Right-handed alpha
Helix 27
27
B
317 322Right-handed alpha
Helix 28
28
B
355 369Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1MB4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
30 35parallel
Strand 3
A
2 6parallel
Strand 4
A
67 70parallel
Strand 5
A
92 95parallel
Strand 6
A
128 131parallel
Strand 7
A
106 109parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
152 160parallel
Strand 3
A
273 282anti-parallel
Strand 4
A
338 349anti-parallel
Strand 5
A
327 335anti-parallel
Strand 6
A
302 304parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
267 268anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
30 35parallel
Strand 3
B
2 6parallel
Strand 4
B
67 70parallel
Strand 5
B
92 95parallel
Strand 6
B
128 130parallel
Strand 7
B
106 108parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
327 335parallel
Strand 3
B
338 349anti-parallel
Strand 4
B
273 282anti-parallel
Strand 5
B
152 161anti-parallel
Strand 6
B
261 262parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
327 335parallel
Strand 3
B
338 349anti-parallel
Strand 4
B
273 282anti-parallel
Strand 5
B
152 161anti-parallel
Strand 6
B
265 267parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il