Analysis of interatomic Contacts of Structural Units in PDB entry:
1MBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MBM entry

There are 4 chains in PDB entry 1MBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7GLU 204
B
 LYS 7ASP 198
C
 LYS 7ILE 197
D
 ARG 9ARG 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1MBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 42Right-handed alpha
Helix 2
2
A
116 120Right-handed 310
Helix 3
3
A
160 165Right-handed alpha
Helix 4
4
A
191 199Right-handed alpha
Helix 5
5
B
38 42Right-handed alpha
Helix 6
6
B
160 165Right-handed alpha
Helix 7
7
B
191 197Right-handed alpha
Helix 8
8
C
38 42Right-handed alpha
Helix 9
9
C
116 120Right-handed 310
Helix 10
10
C
160 165Right-handed alpha
Helix 11
11
C
191 197Right-handed alpha
Helix 12
12
D
38 42Right-handed alpha
Helix 13
13
D
116 120Right-handed 310
Helix 14
14
D
160 165Right-handed alpha
Helix 15
15
D
191 198Right-handed alpha
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There are 15 sheets in PDB entry 1MBM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
12 16anti-parallel
Strand 4
A
20 28anti-parallel
Strand 5
A
31 37anti-parallel
Strand 6
A
66 71anti-parallel
Strand 7
A
61 63anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 138first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
123 126anti-parallel
Strand 5
A
61 63first strand
Strand 6
A
91 97first strand
Strand 7
A
111 112first strand
Strand 8
A
142 146anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
158 159parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
171 173anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
54 63anti-parallel
Strand 3
B
46 51anti-parallel
Strand 4
B
12 16anti-parallel
Strand 5
B
20 27anti-parallel
Strand 6
B
32 37anti-parallel
Strand 7
B
66 71anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 138first strand
Strand 2
B
123 126anti-parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
111 112anti-parallel
Strand 6
B
142 146anti-parallel
Strand 7
B
152 153anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
182 183parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
188 190anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 59first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
12 16anti-parallel
Strand 4
C
20 27anti-parallel
Strand 5
C
32 37anti-parallel
Strand 6
C
66 71anti-parallel
Strand 7
C
61 63anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 153first strand
Strand 2
C
142 146anti-parallel
Strand 3
C
129 137anti-parallel
Strand 4
C
123 126anti-parallel
Strand 5
C
91 97anti-parallel
Strand 6
C
100 106anti-parallel
Strand 7
C
111 112anti-parallel
Strand 8
C
142 146anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 159first strand
Strand 2
C
182 183parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
188 190anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 59first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
12 16anti-parallel
Strand 4
D
20 28anti-parallel
Strand 5
D
31 37anti-parallel
Strand 6
D
66 71anti-parallel
Strand 7
D
61 63anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 153first strand
Strand 2
D
142 146anti-parallel
Strand 3
D
129 138anti-parallel
Strand 4
D
123 126anti-parallel
Strand 5
D
91 97anti-parallel
Strand 6
D
100 106anti-parallel
Strand 7
D
111 112anti-parallel
Strand 8
D
142 146anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 159first strand
Strand 2
D
182 183parallel
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