Analysis of interatomic Contacts of Structural Units in PDB entry:
1MBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MBT entry

There is 1 chain in PDB entry 1MBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3SER 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1MBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 7Right-handed 310
Helix 2
2
A
26 39Right-handed alpha
Helix 3
3
A
89 98Right-handed alpha
Helix 4
4
A
105 107Right-handed 310
Helix 5
5
A
114 120Right-handed alpha
Helix 6
6
A
129 132Right-handed 310
Helix 7
7
A
162 165Right-handed alpha
Helix 8
8
A
191 195Right-handed 310
Helix 9
9
A
203 217Right-handed alpha
Helix 10
10
A
238 245Right-handed alpha
Helix 11
11
A
265 271Right-handed alpha
Helix 12
12
A
300 318Right-handed alpha
Helix 13
13
A
337 340Right-handed alpha
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There are 5 sheets in PDB entry 1MBT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
61 65parallel
Strand 3
A
43 46parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
327 329parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
78 84anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
133 139anti-parallel
Strand 5
A
146 150anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
171 173anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
292 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il