Analysis of interatomic Contacts of Structural Units in PDB entry:
1MC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MC8 entry

There are 2 chains in PDB entry 1MC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 332
B
 GLY 2SER 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 1MC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed 310
Helix 2
2
A
28 39Right-handed alpha
Helix 3
3
A
55 72Right-handed alpha
Helix 4
4
A
108 112Right-handed 310
Helix 5
5
A
128 143Right-handed alpha
Helix 6
6
A
152 162Right-handed alpha
Helix 7
7
A
174 179Right-handed alpha
Helix 8
8
A
187 191Right-handed 310
Helix 9
9
A
212 218Right-handed alpha
Helix 10
10
A
222 234Right-handed alpha
Helix 11
11
A
246 256Right-handed alpha
Helix 12
12
A
260 264Right-handed 310
Helix 13
13
A
272 281Right-handed alpha
Helix 14
14
A
296 305Right-handed alpha
Helix 15
15
A
311 328Right-handed alpha
Helix 16
16
B
15 20Right-handed 310
Helix 17
17
B
28 39Right-handed alpha
Helix 18
18
B
55 70Right-handed alpha
Helix 19
19
B
102 107Right-handed alpha
Helix 20
20
B
118 123Right-handed alpha
Helix 21
21
B
129 142Right-handed alpha
Helix 22
22
B
152 163Right-handed alpha
Helix 23
23
B
174 179Right-handed alpha
Helix 24
24
B
187 191Right-handed 310
Helix 25
25
B
212 220Right-handed alpha
Helix 26
26
B
222 234Right-handed alpha
Helix 27
27
B
246 257Right-handed alpha
Helix 28
28
B
260 266Right-handed alpha
Helix 29
29
B
271 281Right-handed alpha
Helix 30
30
B
296 306Right-handed alpha
Helix 31
31
B
311 330Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1MC8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
23 27parallel
Strand 3
A
169 170parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
45 46anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
208 211anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
208 211anti-parallel
Strand 3
B
183 185anti-parallel
Strand 4
B
168 170parallel
Strand 5
B
23 27parallel
Strand 6
B
74 78parallel
Strand 7
B
146 147parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il