Analysis of interatomic Contacts of Structural Units in PDB entry:
1MCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MCP entry

There are 2 chains in PDB entry 1MCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
ASP 1CYS 220
H
GLU 1CYS 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 1MCP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
L
127 132Right-handed alpha
Helix 2
2
L
189 193Right-handed alpha
Helix 3
3
H
89 93Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 1MCP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
109 112parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
59 60first strand
Strand 2
L
51 55anti-parallel
Strand 3
L
39 44anti-parallel
Strand 4
L
91 96anti-parallel
Strand 5
L
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
120 124first strand
Strand 2
L
135 145anti-parallel
Strand 3
L
179 188anti-parallel
Strand 4
L
165 169anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
151 155first strand
Strand 2
L
197 203anti-parallel
Strand 3
L
211 216anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
80 86anti-parallel
Strand 4
H
70 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
46 50first strand
Strand 2
H
33 39anti-parallel
Strand 3
H
94 103anti-parallel
Strand 4
H
107 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
46 50first strand
Strand 2
H
33 39anti-parallel
Strand 3
H
94 103anti-parallel
Strand 4
H
116 120anti-parallel
Strand 5
H
11 12parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
129 133first strand
Strand 2
H
144 153anti-parallel
Strand 3
H
185 193anti-parallel
Strand 4
H
171 174anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
129 133first strand
Strand 2
H
144 153anti-parallel
Strand 3
H
185 193anti-parallel
Strand 4
H
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
159 163first strand
Strand 2
H
204 210anti-parallel
Strand 3
H
216 220anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il