Analysis of interatomic Contacts of Structural Units in PDB entry:
1MD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MD3 entry

There are 2 chains in PDB entry 1MD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLN 209
B
 PRO 2GLN 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1MD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
14 24Right-handed alpha
Helix 3
3
A
34 41Right-handed alpha
Helix 4
4
A
41 47Right-handed alpha
Helix 5
5
A
64 76Right-handed alpha
Helix 6
6
A
82 110Right-handed alpha
Helix 7
7
A
110 135Right-handed alpha
Helix 8
8
A
136 140Right-handed 310
Helix 9
9
A
149 166Right-handed alpha
Helix 10
10
A
173 185Right-handed alpha
Helix 11
11
A
186 195Right-handed alpha
Helix 12
12
A
195 200Right-handed alpha
Helix 13
13
B
11 13Right-handed 310
Helix 14
14
B
14 24Right-handed alpha
Helix 15
15
B
34 40Right-handed alpha
Helix 16
16
B
41 47Right-handed alpha
Helix 17
17
B
64 77Right-handed alpha
Helix 18
18
B
82 110Right-handed alpha
Helix 19
19
B
110 135Right-handed alpha
Helix 20
20
B
136 140Right-handed 310
Helix 21
21
B
149 166Right-handed alpha
Helix 22
22
B
173 186Right-handed alpha
Helix 23
23
B
186 195Right-handed alpha
Helix 24
24
B
195 200Right-handed alpha
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There are 2 sheets in PDB entry 1MD3. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
3 7parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
60 63anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
3 7parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
60 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il