Analysis of interatomic Contacts of Structural Units in PDB entry:
1MDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MDB entry

There is 1 chain in PDB entry 1MDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1MDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 19Right-handed alpha
Helix 2
2
A
26 39Right-handed alpha
Helix 3
3
A
53 71Right-handed alpha
Helix 4
4
A
86 99Right-handed alpha
Helix 5
5
A
110 121Right-handed alpha
Helix 6
6
A
137 148Right-handed alpha
Helix 7
7
A
167 169Right-handed 310
Helix 8
8
A
204 219Right-handed alpha
Helix 9
9
A
234 240Right-handed alpha
Helix 10
10
A
241 249Right-handed alpha
Helix 11
11
A
260 272Right-handed alpha
Helix 12
12
A
279 293Right-handed alpha
Helix 13
13
A
311 316Right-handed alpha
Helix 14
14
A
317 322Right-handed alpha
Helix 15
15
A
345 352Right-handed alpha
Helix 16
16
A
395 403Right-handed alpha
Helix 17
17
A
430 432Right-handed 310
Helix 18
18
A
441 450Right-handed alpha
Helix 19
19
A
484 495Right-handed alpha
Helix 20
20
A
498 502Right-handed 310
Helix 21
21
A
521 535Right-handed alpha
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There are 7 sheets in PDB entry 1MDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
252 255parallel
Strand 4
A
225 228parallel
Strand 5
A
275 278parallel
Strand 6
A
302 306parallel
Strand 7
A
325 331parallel
Strand 8
A
337 339anti-parallel
Strand 9
A
355 356anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
77 80parallel
Strand 3
A
125 129parallel
Strand 4
A
154 157parallel
Strand 5
A
164 165parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
135 136anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 189first strand
Strand 2
A
199 203anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
409 417anti-parallel
Strand 4
A
423 428anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
439 440anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 465first strand
Strand 2
A
469 478anti-parallel
Strand 3
A
505 508parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il