Analysis of interatomic Contacts of Structural Units in PDB entry:
1MDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MDM entry

There are 4 chains in PDB entry 1MDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 1 T 26
D
 A 1 A 26
A
 GLY 19LYS 142
B
 ARG 309PRO 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1MDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 47Right-handed alpha
Helix 2
2
A
50 58Right-handed alpha
Helix 3
3
A
61 76Right-handed alpha
Helix 4
4
A
92 106Right-handed alpha
Helix 5
5
A
110 121Right-handed alpha
Helix 6
6
A
131 141Right-handed alpha
Helix 7
7
B
322 330Right-handed alpha
Helix 8
8
B
336 346Right-handed alpha
Helix 9
9
B
347 351Right-handed 310
Helix 10
10
B
367 379Right-handed alpha
Helix 11
11
B
385 397Right-handed alpha
Helix 12
12
B
398 400Right-handed 310
Helix 13
13
B
417 423Right-handed alpha
Helix 14
14
B
425 433Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1MDM.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 356first strand
Strand 2
B
362 364anti-parallel
Strand 3
B
411 414anti-parallel
Strand 4
B
402 404anti-parallel
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