Analysis of interatomic Contacts of Structural Units in PDB entry:
1MDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MDP entry

There are 2 chains in PDB entry 1MDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 LYS 1LYS 370
2
 LYS 1LYS 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1MDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
16 32Right-handed alpha
Helix 2
2
1
42 52Right-handed alpha
Helix 3
3
1
66 72Right-handed alpha
Helix 4
4
1
82 87Right-handed alpha
Helix 5
5
1
90 97Right-handed alpha
Helix 6
6
1
129 132Right-handed 310
Helix 7
7
1
157 164Right-handed alpha
Helix 8
8
1
185 201Right-handed alpha
Helix 9
9
1
209 219Right-handed alpha
Helix 10
10
1
231 239Right-handed alpha
Helix 11
11
1
272 283Right-handed alpha
Helix 12
12
1
286 297Right-handed alpha
Helix 13
13
1
304 312Right-handed alpha
Helix 14
14
1
314 325Right-handed alpha
Helix 15
15
1
335 353Right-handed alpha
Helix 16
16
1
356 369Right-handed alpha
Helix 17
17
2
16 32Right-handed alpha
Helix 18
18
2
42 54Right-handed alpha
Helix 19
19
2
66 74Right-handed alpha
Helix 20
20
2
82 87Right-handed alpha
Helix 21
21
2
90 97Right-handed alpha
Helix 22
22
2
153 164Right-handed alpha
Helix 23
23
2
185 201Right-handed alpha
Helix 24
24
2
209 219Right-handed alpha
Helix 25
25
2
228 230Right-handed 310
Helix 26
26
2
231 239Right-handed alpha
Helix 27
27
2
272 283Right-handed alpha
Helix 28
28
2
286 297Right-handed alpha
Helix 29
29
2
304 312Right-handed alpha
Helix 30
30
2
314 327Right-handed alpha
Helix 31
31
2
335 353Right-handed alpha
Helix 32
32
2
356 370Right-handed alpha
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There are 10 sheets in PDB entry 1MDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
301 302first strand
Strand 2
1
106 111anti-parallel
Strand 3
1
258 266anti-parallel
Strand 4
1
59 63anti-parallel
Strand 5
1
7 10parallel
Strand 6
1
35 38parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
301 302first strand
Strand 2
1
106 111anti-parallel
Strand 3
1
258 266anti-parallel
Strand 4
1
328 329parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
98 99first strand
Strand 2
1
102 103anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
224 227first strand
Strand 2
1
114 118anti-parallel
Strand 3
1
242 245anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
167 172first strand
Strand 2
1
175 182anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
301 302first strand
Strand 2
2
106 111anti-parallel
Strand 3
2
258 266anti-parallel
Strand 4
2
59 63anti-parallel
Strand 5
2
7 10parallel
Strand 6
2
35 38parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
301 302first strand
Strand 2
2
106 111anti-parallel
Strand 3
2
258 266anti-parallel
Strand 4
2
328 329parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
224 227first strand
Strand 2
2
114 118anti-parallel
Strand 3
2
242 245anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
167 172first strand
Strand 2
2
175 182anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
249 250first strand
Strand 2
2
253 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il