Analysis of interatomic Contacts of Structural Units in PDB entry:
1MDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MDT entry

There are 2 chains in PDB entry 1MDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 535
B
 GLY 1SER 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1MDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
CH2
A
29 33Right-handed 310
Helix 2
CH3
A
59 66Right-handed alpha
Helix 3
CH4
A
99 106Right-handed alpha
Helix 4
C4P
A
114 118Right-handed alpha
Helix 5
CH5
A
121 128Right-handed alpha
Helix 6
C5P
A
155 158Right-handed 310
Helix 7
CH7
A
176 186Right-handed alpha
Helix 8
TH1
A
206 222Right-handed alpha
Helix 9
TH2
A
224 232Right-handed alpha
Helix 10
TH3
A
240 254Right-handed alpha
Helix 11
TH4
A
260 268Right-handed alpha
Helix 12
TH5
A
275 288Right-handed alpha
Helix 13
T5P
A
291 295Right-handed alpha
Helix 14
TH6
A
297 304Right-handed alpha
Helix 15
TH7
A
310 314Right-handed alpha
Helix 16
TH8
A
326 347Right-handed alpha
Helix 17
TH9
A
358 376Right-handed alpha
Helix 18
CH2
B
29 33Right-handed 310
Helix 19
CH3
B
59 66Right-handed alpha
Helix 20
CH4
B
99 106Right-handed alpha
Helix 21
C4P
B
114 118Right-handed alpha
Helix 22
CH5
B
121 128Right-handed alpha
Helix 23
C5P
B
155 158Right-handed 310
Helix 24
CH7
B
176 186Right-handed alpha
Helix 25
TH1
B
206 222Right-handed alpha
Helix 26
TH2
B
224 232Right-handed alpha
Helix 27
TH3
B
240 254Right-handed alpha
Helix 28
TH4
B
260 268Right-handed alpha
Helix 29
TH5
B
275 288Right-handed alpha
Helix 30
T5P
B
291 295Right-handed alpha
Helix 31
TH6
B
297 304Right-handed alpha
Helix 32
TH7
B
310 314Right-handed alpha
Helix 33
TH8
B
326 347Right-handed alpha
Helix 34
TH9
B
358 376Right-handed alpha
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There are 6 sheets in PDB entry 1MDT. Click on sheet of interest to get list of strands forming it: AC1, AC2, AR1, BC1, BC2, BR1,

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
133 139parallel
Strand 4
A
147 151anti-parallel
Strand 5
A
53 56anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
160 166anti-parallel
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There are 11 strands in AR1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
394 398anti-parallel
Strand 3
A
413 422anti-parallel
Strand 4
A
485 493anti-parallel
Strand 5
A
449 452anti-parallel
Strand 6
A
455 464anti-parallel
Strand 7
A
468 473anti-parallel
Strand 8
A
431 435anti-parallel
Strand 9
A
508 518anti-parallel
Strand 10
A
521 534anti-parallel
Strand 11
A
405 407parallel
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There are 5 strands in BC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
88 94anti-parallel
Strand 3
B
133 139parallel
Strand 4
B
147 151anti-parallel
Strand 5
B
53 56anti-parallel
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There are 3 strands in BC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
79 85anti-parallel
Strand 3
B
160 166anti-parallel
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There are 11 strands in BR1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 391first strand
Strand 2
B
394 398anti-parallel
Strand 3
B
413 422anti-parallel
Strand 4
B
485 493anti-parallel
Strand 5
B
449 452anti-parallel
Strand 6
B
455 464anti-parallel
Strand 7
B
468 473anti-parallel
Strand 8
B
431 435anti-parallel
Strand 9
B
508 518anti-parallel
Strand 10
B
521 534anti-parallel
Strand 11
B
405 407parallel
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