Analysis of interatomic Contacts of Structural Units in PDB entry:
1MDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MDW entry

There are 2 chains in PDB entry 1MDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22THR 344
B
 ARG 23PRO 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1MDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 30Right-handed 310
Helix 2
2
A
31 43Right-handed alpha
Helix 3
3
A
54 59Right-handed alpha
Helix 4
4
A
67 71Right-handed 310
Helix 5
5
A
77 82Right-handed alpha
Helix 6
6
A
93 97Right-handed 310
Helix 7
7
A
104 115Right-handed alpha
Helix 8
8
A
117 125Right-handed alpha
Helix 9
9
A
176 189Right-handed alpha
Helix 10
10
A
191 196Right-handed 310
Helix 11
11
A
204 208Right-handed 310
Helix 12
12
A
223 234Right-handed alpha
Helix 13
13
A
246 250Right-handed 310
Helix 14
14
A
301 307Right-handed 310
Helix 15
15
A
308 316Right-handed alpha
Helix 16
16
A
328 335Right-handed alpha
Helix 17
17
B
28 30Right-handed 310
Helix 18
18
B
31 43Right-handed alpha
Helix 19
19
B
54 59Right-handed alpha
Helix 20
20
B
67 71Right-handed 310
Helix 21
21
B
77 82Right-handed alpha
Helix 22
22
B
93 97Right-handed 310
Helix 23
23
B
104 115Right-handed alpha
Helix 24
24
B
117 125Right-handed alpha
Helix 25
25
B
176 190Right-handed alpha
Helix 26
26
B
191 196Right-handed 310
Helix 27
27
B
204 209Right-handed alpha
Helix 28
28
B
223 234Right-handed alpha
Helix 29
29
B
246 250Right-handed 310
Helix 30
30
B
301 307Right-handed 310
Helix 31
31
B
308 316Right-handed alpha
Helix 32
32
B
328 335Right-handed alpha
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There are 6 sheets in PDB entry 1MDW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
148 155parallel
Strand 3
A
138 145anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
158 161anti-parallel
Strand 3
A
164 165anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 216first strand
Strand 2
A
337 342anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
264 274anti-parallel
Strand 5
A
277 285anti-parallel
Strand 6
A
323 327anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
148 155parallel
Strand 3
B
138 145anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
158 161anti-parallel
Strand 3
B
164 165anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 216first strand
Strand 2
B
337 342anti-parallel
Strand 3
B
237 241anti-parallel
Strand 4
B
264 273anti-parallel
Strand 5
B
278 285anti-parallel
Strand 6
B
323 327anti-parallel
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