Analysis of interatomic Contacts of Structural Units in PDB entry:
1MEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MEE entry

There are 2 chains in PDB entry 1MEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 275
I
 LEU 7GLY 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1MEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
12 21Right-handed alpha
Helix 2
B
A
64 73Right-handed alpha
Helix 3
C
A
103 118Right-handed alpha
Helix 4
D
A
132 146Right-handed alpha
Helix 5
E
A
224 239Right-handed alpha
Helix 6
F
A
242 253Right-handed alpha
Helix 7
A1
I
18 28Right-handed alpha
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There are 2 sheets in PDB entry 1MEE. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 8 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
89 95parallel
Strand 3
A
26 32parallel
Strand 4
A
120 124parallel
Strand 5
A
148 153parallel
Strand 6
A
175 180parallel
Strand 7
A
197 202parallel
Strand 8
A
266 268parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
213 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il