Analysis of interatomic Contacts of Structural Units in PDB entry:
1MF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MF2 entry

There are 4 chains in PDB entry 1MF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1ARG 211
H
 ASP 1ASP 209
M
 ASP 1ARG 211
N
 ASP 1ASP 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1MF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
122 126Right-handed alpha
Helix 2
2
L
183 188Right-handed alpha
Helix 3
3
H
29 31Right-handed 310
Helix 4
4
H
73 75Right-handed 310
Helix 5
5
H
84 86Right-handed 310
Helix 6
6
H
150 152Right-handed 310
Helix 7
7
H
182 185Right-handed alpha
Helix 8
8
H
195 197Right-handed 310
Helix 9
9
M
122 126Right-handed alpha
Helix 10
10
M
183 188Right-handed alpha
Helix 11
11
N
29 31Right-handed 310
Helix 12
12
N
84 86Right-handed 310
Helix 13
13
N
150 152Right-handed 310
Helix 14
14
N
180 182Right-handed 310
Helix 15
15
N
195 197Right-handed 310
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There are 19 sheets in PDB entry 1MF2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
102 104first strand
Strand 2
L
84 90anti-parallel
Strand 3
L
33 38anti-parallel
Strand 4
L
45 48anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 137anti-parallel
Strand 3
L
174 182anti-parallel
Strand 4
L
159 164anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 150first strand
Strand 2
L
191 197anti-parallel
Strand 3
L
205 210anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
68 72anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
33 40anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
130 140anti-parallel
Strand 3
H
170 179anti-parallel
Strand 4
H
158 160anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
146 149first strand
Strand 2
H
189 194anti-parallel
Strand 3
H
199 204anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
4 7first strand
Strand 2
M
19 25anti-parallel
Strand 3
M
70 75anti-parallel
Strand 4
M
62 67anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
102 104first strand
Strand 2
M
84 90anti-parallel
Strand 3
M
33 38anti-parallel
Strand 4
M
45 48anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
114 118first strand
Strand 2
M
129 137anti-parallel
Strand 3
M
174 182anti-parallel
Strand 4
M
159 164anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
144 150first strand
Strand 2
M
191 198anti-parallel
Strand 3
M
205 210anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
3 7first strand
Strand 2
N
18 25anti-parallel
Strand 3
N
77 82anti-parallel
Strand 4
N
68 72anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
10 12first strand
Strand 2
N
107 111parallel
Strand 3
N
88 95anti-parallel
Strand 4
N
33 40anti-parallel
Strand 5
N
44 51anti-parallel
Strand 6
N
57 59anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
120 124first strand
Strand 2
N
130 140anti-parallel
Strand 3
N
170 179anti-parallel
Strand 4
N
158 160anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
146 149first strand
Strand 2
N
189 194anti-parallel
Strand 3
N
199 204anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
164 166first strand
Strand 2
N
169 171anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
93 98first strand
Strand 2
H
100 103anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
93 98first strand
Strand 2
N
100 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il