Analysis of interatomic Contacts of Structural Units in PDB entry:
1MFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MFD entry

There are 2 chains in PDB entry 1MFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 1ALA 212
H
 GLU 251ARG 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1MFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
L
24 27Right-handed 310
Helix 2
H2
L
30 34Right-handed 310
Helix 3
H3
L
124 129Right-handed alpha
Helix 4
H4
L
127 131Right-handed 310
Helix 5
H5
L
184 188Right-handed alpha
Helix 6
H6
L
187 190Right-handed 310
Helix 7
H7
H
278 282Right-handed 310
Helix 8
H8
H
442 446Right-handed alpha
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There are 8 sheets in PDB entry 1MFD. Click on sheet of interest to get list of strands forming it: B1, B2, B3, B4, B5, B6, B7, B8,

There are 4 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
1 7first strand
Strand 2
L
16 26anti-parallel
Strand 3
L
71 80parallel
Strand 4
L
65 70anti-parallel
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There are 6 strands in B2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 12first strand
Strand 2
L
97 109parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
36 42parallel
Strand 5
L
44 51anti-parallel
Strand 6
L
55 58parallel
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There are 4 strands in B3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
251 257first strand
Strand 2
H
265 276anti-parallel
Strand 3
H
327 335parallel
Strand 4
H
317 323anti-parallel
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There are 6 strands in B4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
258 262first strand
Strand 2
H
353 367parallel
Strand 3
H
341 352anti-parallel
Strand 4
H
283 291parallel
Strand 5
H
292 302anti-parallel
Strand 6
H
307 311parallel
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There are 4 strands in B5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 124first strand
Strand 2
L
133 143anti-parallel
Strand 3
L
172 183parallel
Strand 4
L
161 170anti-parallel
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There are 3 strands in B6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 155first strand
Strand 2
L
192 201anti-parallel
Strand 3
L
202 211parallel
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There are 4 strands in B7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
372 382first strand
Strand 2
H
391 401anti-parallel
Strand 3
H
428 438parallel
Strand 4
H
416 426anti-parallel
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There are 3 strands in B8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
404 410first strand
Strand 2
H
446 456anti-parallel
Strand 3
H
457 468parallel
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