Analysis of interatomic Contacts of Structural Units in PDB entry:
1MFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MFP entry

There are 2 chains in PDB entry 1MFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LEU 259
B
 GLY 1002LEU 1259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1MFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
67 82Right-handed alpha
Helix 5
5
A
96 101Right-handed 310
Helix 6
6
A
103 108Right-handed alpha
Helix 7
7
A
109 121Right-handed alpha
Helix 8
8
A
121 132Right-handed alpha
Helix 9
9
A
133 135Right-handed 310
Helix 10
10
A
146 150Right-handed 310
Helix 11
11
A
157 178Right-handed alpha
Helix 12
12
A
179 181Right-handed 310
Helix 13
13
A
194 198Right-handed 310
Helix 14
14
A
202 214Right-handed alpha
Helix 15
15
A
221 233Right-handed alpha
Helix 16
16
A
234 238Right-handed 310
Helix 17
17
A
250 254Right-handed 310
Helix 18
18
B
1019 1031Right-handed alpha
Helix 19
19
B
1041 1055Right-handed alpha
Helix 20
20
B
1067 1082Right-handed alpha
Helix 21
21
B
1096 1101Right-handed 310
Helix 22
22
B
1103 1108Right-handed alpha
Helix 23
23
B
1109 1121Right-handed alpha
Helix 24
24
B
1121 1132Right-handed alpha
Helix 25
25
B
1133 1135Right-handed 310
Helix 26
26
B
1146 1150Right-handed 310
Helix 27
27
B
1156 1178Right-handed alpha
Helix 28
28
B
1194 1199Right-handed alpha
Helix 29
29
B
1202 1214Right-handed alpha
Helix 30
30
B
1221 1233Right-handed alpha
Helix 31
31
B
1234 1238Right-handed 310
Helix 32
32
B
1250 1254Right-handed 310
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There are 2 sheets in PDB entry 1MFP. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
34 39parallel
Strand 3
A
8 11parallel
Strand 4
A
88 90parallel
Strand 5
A
140 145parallel
Strand 6
A
183 189parallel
Strand 7
A
244 247parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1060 1062first strand
Strand 2
B
1034 1039parallel
Strand 3
B
1008 1011parallel
Strand 4
B
1088 1090parallel
Strand 5
B
1139 1145parallel
Strand 6
B
1182 1189parallel
Strand 7
B
1244 1247parallel
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