Analysis of interatomic Contacts of Structural Units in PDB entry:
1MFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MFX entry

There is 1 chain in PDB entry 1MFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1CYS 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1MFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 39Right-handed alpha
Helix 2
2
A
49 59Right-handed alpha
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
77 82Right-handed alpha
Helix 5
5
A
97 108Right-handed alpha
Helix 6
6
A
118 128Right-handed alpha
Helix 7
7
A
136 158Right-handed alpha
Helix 8
8
A
173 190Right-handed alpha
Helix 9
9
A
202 220Right-handed alpha
Helix 10
10
A
232 234Right-handed 310
Helix 11
11
A
235 261Right-handed alpha
Helix 12
12
A
270 278Right-handed alpha
Helix 13
13
A
288 321Right-handed alpha
Helix 14
14
A
321 336Right-handed alpha
Helix 15
15
A
343 349Right-handed alpha
Helix 16
16
A
350 364Right-handed alpha
Helix 17
17
A
394 399Right-handed alpha
Helix 18
18
A
401 406Right-handed alpha
Helix 19
19
A
412 416Right-handed 310
Helix 20
20
A
430 434Right-handed 310
Helix 21
21
A
445 464Right-handed alpha
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There are 3 sheets in PDB entry 1MFX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
72 73anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
390 391anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
383 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il