Analysis of interatomic Contacts of Structural Units in PDB entry:
1MFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MFZ entry

There are 4 chains in PDB entry 1MFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	TRP 436
B	MSE 1	TRP 436
C	MSE 1	TRP 436
D	MSE 1	TRP 436

There are 82 helices in PDB entry 1MFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	21	Right-handed alpha
Helix 2	2	A	32	41	Right-handed alpha
Helix 3	3	A	50	61	Right-handed alpha
Helix 4	4	A	69	76	Right-handed alpha
Helix 5	5	A	96	113	Right-handed alpha
Helix 6	6	A	128	133	Right-handed alpha
Helix 7	7	A	133	143	Right-handed alpha
Helix 8	8	A	163	170	Right-handed alpha
Helix 9	9	A	180	193	Right-handed alpha
Helix 10	10	A	202	234	Right-handed alpha
Helix 11	11	A	237	246	Right-handed alpha
Helix 12	12	A	268	283	Right-handed alpha
Helix 13	13	A	289	291	Right-handed 310
Helix 14	14	A	292	309	Right-handed alpha
Helix 15	15	A	333	345	Right-handed alpha
Helix 16	16	A	353	363	Right-handed alpha
Helix 17	17	A	365	372	Right-handed alpha
Helix 18	18	A	373	378	Right-handed alpha
Helix 19	19	A	383	390	Right-handed alpha
Helix 20	20	A	401	409	Right-handed alpha
Helix 21	21	B	9	22	Right-handed alpha
Helix 22	22	B	32	41	Right-handed alpha
Helix 23	23	B	50	61	Right-handed alpha
Helix 24	24	B	69	76	Right-handed alpha
Helix 25	25	B	96	113	Right-handed alpha
Helix 26	26	B	128	133	Right-handed alpha
Helix 27	27	B	133	143	Right-handed alpha
Helix 28	28	B	163	170	Right-handed alpha
Helix 29	29	B	180	192	Right-handed alpha
Helix 30	30	B	203	234	Right-handed alpha
Helix 31	31	B	237	246	Right-handed alpha
Helix 32	32	B	268	283	Right-handed alpha
Helix 33	33	B	289	291	Right-handed 310
Helix 34	34	B	292	309	Right-handed alpha
Helix 35	35	B	333	345	Right-handed alpha
Helix 36	36	B	353	360	Right-handed alpha
Helix 37	37	B	365	372	Right-handed alpha
Helix 38	38	B	373	378	Right-handed alpha
Helix 39	39	B	383	390	Right-handed alpha
Helix 40	40	B	400	402	Right-handed 310
Helix 41	41	B	403	409	Right-handed alpha
Helix 42	42	C	11	21	Right-handed alpha
Helix 43	43	C	32	41	Right-handed alpha
Helix 44	44	C	50	61	Right-handed alpha
Helix 45	45	C	69	76	Right-handed alpha
Helix 46	46	C	96	113	Right-handed alpha
Helix 47	47	C	128	133	Right-handed alpha
Helix 48	48	C	133	143	Right-handed alpha
Helix 49	49	C	163	170	Right-handed alpha
Helix 50	50	C	180	192	Right-handed alpha
Helix 51	51	C	202	234	Right-handed alpha
Helix 52	52	C	237	248	Right-handed alpha
Helix 53	53	C	268	283	Right-handed alpha
Helix 54	54	C	289	291	Right-handed 310
Helix 55	55	C	292	309	Right-handed alpha
Helix 56	56	C	333	345	Right-handed alpha
Helix 57	57	C	353	361	Right-handed alpha
Helix 58	58	C	365	372	Right-handed alpha
Helix 59	59	C	373	378	Right-handed alpha
Helix 60	60	C	383	390	Right-handed alpha
Helix 61	61	C	402	409	Right-handed alpha
Helix 62	62	D	9	22	Right-handed alpha
Helix 63	63	D	32	41	Right-handed alpha
Helix 64	64	D	50	61	Right-handed alpha
Helix 65	65	D	69	76	Right-handed alpha
Helix 66	66	D	96	110	Right-handed alpha
Helix 67	67	D	128	133	Right-handed alpha
Helix 68	68	D	133	143	Right-handed alpha
Helix 69	69	D	163	170	Right-handed alpha
Helix 70	70	D	180	192	Right-handed alpha
Helix 71	71	D	202	234	Right-handed alpha
Helix 72	72	D	237	246	Right-handed alpha
Helix 73	73	D	268	283	Right-handed alpha
Helix 74	74	D	289	291	Right-handed 310
Helix 75	75	D	292	309	Right-handed alpha
Helix 76	76	D	333	345	Right-handed alpha
Helix 77	77	D	353	360	Right-handed alpha
Helix 78	78	D	365	372	Right-handed alpha
Helix 79	79	D	373	378	Right-handed alpha
Helix 80	80	D	383	391	Right-handed alpha
Helix 81	81	D	400	402	Right-handed 310
Helix 82	82	D	403	409	Right-handed alpha

There are 8 sheets in PDB entry 1MFZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	25	29	parallel
Strand 3	A	2	6	parallel
Strand 4	A	79	82	parallel
Strand 5	A	118	121	parallel
Strand 6	A	151	154	parallel
Strand 7	A	174	178	anti-parallel
Strand 8	A	198	201	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	315	319	parallel
Strand 3	A	393	396	parallel
Strand 4	A	415	418	parallel
Strand 5	A	431	433	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	67	first strand
Strand 2	B	25	29	parallel
Strand 3	B	2	6	parallel
Strand 4	B	79	82	parallel
Strand 5	B	118	121	parallel
Strand 6	B	151	154	parallel
Strand 7	B	174	178	anti-parallel
Strand 8	B	198	202	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	315	319	parallel
Strand 3	B	393	396	parallel
Strand 4	B	415	418	parallel
Strand 5	B	431	433	parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	25	29	parallel
Strand 3	C	2	6	parallel
Strand 4	C	79	82	parallel
Strand 5	C	118	121	parallel
Strand 6	C	151	154	parallel
Strand 7	C	174	178	anti-parallel
Strand 8	C	198	201	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	315	319	parallel
Strand 3	C	393	396	parallel
Strand 4	C	415	418	parallel
Strand 5	C	431	433	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	67	first strand
Strand 2	D	25	29	parallel
Strand 3	D	2	6	parallel
Strand 4	D	79	82	parallel
Strand 5	D	118	121	parallel
Strand 6	D	151	154	parallel
Strand 7	D	174	178	anti-parallel
Strand 8	D	198	201	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	315	319	parallel
Strand 3	D	393	396	parallel
Strand 4	D	415	418	parallel
Strand 5	D	431	433	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MFZ