Analysis of interatomic Contacts of Structural Units in PDB entry:
1MGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MGP entry

There is 1 chain in PDB entry 1MGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 25LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1MGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 37Right-handed 310
Helix 2
2
A
41 46Right-handed alpha
Helix 3
3
A
68 82Right-handed alpha
Helix 4
4
A
92 106Right-handed alpha
Helix 5
5
A
122 134Right-handed alpha
Helix 6
6
A
146 149Right-handed 310
Helix 7
7
A
150 163Right-handed alpha
Helix 8
8
A
166 180Right-handed alpha
Helix 9
9
A
192 199Right-handed alpha
Helix 10
10
A
233 247Right-handed alpha
Helix 11
11
A
264 276Right-handed alpha
Helix 12
12
A
290 298Right-handed alpha
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There are 3 sheets in PDB entry 1MGP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
28 33parallel
Strand 3
A
110 115parallel
Strand 4
A
138 142parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
54 56anti-parallel
Strand 3
A
87 89anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 232first strand
Strand 2
A
214 221anti-parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
302 309anti-parallel
Strand 5
A
254 261anti-parallel
Strand 6
A
280 288parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il