Analysis of interatomic Contacts of Structural Units in PDB entry:
1MHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MHM entry

There are 2 chains in PDB entry 1MHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 15GLU 72
A
 SER 74THR 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1MHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
36 40Right-handed 310
Helix 2
2
B
41 53Right-handed alpha
Helix 3
3
A
91 94Right-handed 310
Helix 4
4
A
95 106Right-handed alpha
Helix 5
5
A
132 145Right-handed alpha
Helix 6
6
A
192 198Right-handed alpha
Helix 7
7
A
206 214Right-handed alpha
Helix 8
8
A
215 219Right-handed 310
Helix 9
9
A
272 285Right-handed alpha
Helix 10
10
A
298 307Right-handed alpha
Helix 11
11
A
324 326Right-handed 310
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There are 2 sheets in PDB entry 1MHM. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 61first strand
Strand 2
B
66 71anti-parallel
Strand 3
A
75 78anti-parallel
Strand 4
A
81 87anti-parallel
Strand 5
B
16 23anti-parallel
Strand 6
A
110 117anti-parallel
Strand 7
A
165 171anti-parallel
Strand 8
A
151 156anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 229first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
244 251anti-parallel
Strand 4
A
258 264anti-parallel
Strand 5
A
183 191anti-parallel
Strand 6
A
286 295anti-parallel
Strand 7
A
328 336anti-parallel
Strand 8
A
313 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il