Analysis of interatomic Contacts of Structural Units in PDB entry:
1MI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MI3 entry

There are 4 chains in PDB entry 1MI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	VAL 322
B	SER 4	VAL 322
C	SER 4	VAL 322
D	SER 4	VAL 322

There are 64 helices in PDB entry 1MI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	41	Right-handed alpha
Helix 2	2	A	49	53	Right-handed 310
Helix 3	3	A	54	68	Right-handed alpha
Helix 4	4	A	72	76	Right-handed 310
Helix 5	5	A	83	87	Right-handed 310
Helix 6	6	A	88	104	Right-handed alpha
Helix 7	7	A	146	160	Right-handed alpha
Helix 8	8	A	172	183	Right-handed alpha
Helix 9	9	A	200	210	Right-handed alpha
Helix 10	10	A	222	227	Right-handed alpha
Helix 11	11	A	230	235	Right-handed alpha
Helix 12	12	A	242	253	Right-handed alpha
Helix 13	13	A	255	266	Right-handed alpha
Helix 14	14	A	277	284	Right-handed alpha
Helix 15	15	A	293	302	Right-handed alpha
Helix 16	16	A	312	317	Right-handed alpha
Helix 17	17	B	27	41	Right-handed alpha
Helix 18	18	B	49	53	Right-handed 310
Helix 19	19	B	54	68	Right-handed alpha
Helix 20	20	B	72	76	Right-handed 310
Helix 21	21	B	83	87	Right-handed 310
Helix 22	22	B	88	104	Right-handed alpha
Helix 23	23	B	146	160	Right-handed alpha
Helix 24	24	B	172	183	Right-handed alpha
Helix 25	25	B	200	210	Right-handed alpha
Helix 26	26	B	222	227	Right-handed alpha
Helix 27	27	B	230	235	Right-handed alpha
Helix 28	28	B	242	253	Right-handed alpha
Helix 29	29	B	255	266	Right-handed alpha
Helix 30	30	B	277	284	Right-handed alpha
Helix 31	31	B	293	302	Right-handed alpha
Helix 32	32	B	312	317	Right-handed alpha
Helix 33	33	C	27	41	Right-handed alpha
Helix 34	34	C	49	53	Right-handed 310
Helix 35	35	C	54	68	Right-handed alpha
Helix 36	36	C	72	76	Right-handed 310
Helix 37	37	C	83	87	Right-handed 310
Helix 38	38	C	88	104	Right-handed alpha
Helix 39	39	C	146	160	Right-handed alpha
Helix 40	40	C	172	183	Right-handed alpha
Helix 41	41	C	200	210	Right-handed alpha
Helix 42	42	C	222	227	Right-handed alpha
Helix 43	43	C	230	235	Right-handed alpha
Helix 44	44	C	242	253	Right-handed alpha
Helix 45	45	C	255	266	Right-handed alpha
Helix 46	46	C	277	284	Right-handed alpha
Helix 47	47	C	293	302	Right-handed alpha
Helix 48	48	C	312	317	Right-handed alpha
Helix 49	49	D	27	41	Right-handed alpha
Helix 50	50	D	49	53	Right-handed 310
Helix 51	51	D	54	68	Right-handed alpha
Helix 52	52	D	72	76	Right-handed 310
Helix 53	53	D	83	87	Right-handed 310
Helix 54	54	D	88	104	Right-handed alpha
Helix 55	55	D	146	160	Right-handed alpha
Helix 56	56	D	172	183	Right-handed alpha
Helix 57	57	D	200	210	Right-handed alpha
Helix 58	58	D	222	227	Right-handed alpha
Helix 59	59	D	230	235	Right-handed alpha
Helix 60	60	D	242	253	Right-handed alpha
Helix 61	61	D	255	266	Right-handed alpha
Helix 62	62	D	277	284	Right-handed alpha
Helix 63	63	D	293	302	Right-handed alpha
Helix 64	64	D	312	317	Right-handed alpha

There are 8 sheets in PDB entry 1MI3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	15	17	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	45	47	parallel
Strand 3	A	77	82	parallel
Strand 4	A	108	113	parallel
Strand 5	A	163	169	parallel
Strand 6	A	189	193	parallel
Strand 7	A	213	217	parallel
Strand 8	A	270	271	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	15	17	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	45	47	parallel
Strand 3	B	77	82	parallel
Strand 4	B	108	113	parallel
Strand 5	B	163	169	parallel
Strand 6	B	189	193	parallel
Strand 7	B	213	217	parallel
Strand 8	B	270	271	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	9	first strand
Strand 2	C	15	17	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	45	47	parallel
Strand 3	C	77	82	parallel
Strand 4	C	108	113	parallel
Strand 5	C	163	169	parallel
Strand 6	C	189	193	parallel
Strand 7	C	213	217	parallel
Strand 8	C	270	271	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	15	17	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	45	47	parallel
Strand 3	D	77	82	parallel
Strand 4	D	108	113	parallel
Strand 5	D	163	169	parallel
Strand 6	D	189	193	parallel
Strand 7	D	213	217	parallel
Strand 8	D	270	271	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MI3