Analysis of interatomic Contacts of Structural Units in PDB entry:
1MIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MIM entry

There are 2 chains in PDB entry 1MIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 1GLU 210
H
 GLN 1PRO 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1MIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
79 81Right-handed 310
Helix 2
2
L
119 123Right-handed alpha
Helix 3
3
L
180 185Right-handed alpha
Helix 4
4
H
60 62Right-handed 310
Helix 5
5
H
72 74Right-handed 310
Helix 6
6
H
86 88Right-handed 310
Helix 7
7
H
157 159Right-handed 310
Helix 8
8
H
188 192Right-handed 310
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There are 9 sheets in PDB entry 1MIM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
69 74anti-parallel
Strand 4
L
61 66anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
99 103parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
32 37anti-parallel
Strand 5
L
44 47anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
111 115first strand
Strand 2
L
126 134anti-parallel
Strand 3
L
172 179anti-parallel
Strand 4
L
156 160anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
142 147first strand
Strand 2
L
188 194anti-parallel
Strand 3
L
202 207anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 4first strand
Strand 2
H
20 22anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 10first strand
Strand 2
H
109 113parallel
Strand 3
H
90 96anti-parallel
Strand 4
H
31 37anti-parallel
Strand 5
H
43 50anti-parallel
Strand 6
H
56 58anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
15 17first strand
Strand 2
H
76 82anti-parallel
Strand 3
H
66 71anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
122 126first strand
Strand 2
H
137 147anti-parallel
Strand 3
H
178 187anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
152 156first strand
Strand 2
H
197 202anti-parallel
Strand 3
H
207 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il