Analysis of interatomic Contacts of Structural Units in PDB entry:
1MIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MIQ entry

There are 2 chains in PDB entry 1MIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 78ASN 327
B
 THR 76ASN 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1MIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 96Right-handed alpha
Helix 2
2
A
97 113Right-handed alpha
Helix 3
3
A
7 11Right-handed 310
Helix 4
4
A
50 55Right-handed 310
Helix 5
5
A
59 63Right-handed 310
Helix 6
6
A
108 112Right-handed 310
Helix 7
7
A
113 118Right-handed alpha
Helix 8
8
A
138 146Right-handed alpha
Helix 9
9
A
174 176Right-handed 310
Helix 10
10
A
223 235Right-handed alpha
Helix 11
11
A
269 272Right-handed 310
Helix 12
12
A
302 308Right-handed alpha
Helix 13
13
B
87 96Right-handed alpha
Helix 14
14
B
99 114Right-handed alpha
Helix 15
15
B
7 11Right-handed 310
Helix 16
16
B
50 55Right-handed 310
Helix 17
17
B
59 63Right-handed 310
Helix 18
18
B
108 112Right-handed 310
Helix 19
19
B
113 118Right-handed alpha
Helix 20
20
B
138 146Right-handed alpha
Helix 21
21
B
174 176Right-handed 310
Helix 22
22
B
223 234Right-handed alpha
Helix 23
23
B
269 273Right-handed alpha
Helix 24
24
B
302 308Right-handed alpha
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There are 9 sheets in PDB entry 1MIQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 186first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
309 314anti-parallel
Strand 4
A
153 157anti-parallel
Strand 5
A
165 170anti-parallel
Strand 6
A
14 17anti-parallel
Strand 7
A
31 34anti-parallel
Strand 8
A
122 125parallel
Strand 9
A
40 43anti-parallel
Strand 10
A
96 107parallel
Strand 11
A
80 93anti-parallel
Strand 12
A
21 22anti-parallel
Strand 13
A
27 28anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 186first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
309 314anti-parallel
Strand 4
A
153 157anti-parallel
Strand 5
A
165 170anti-parallel
Strand 6
A
14 17anti-parallel
Strand 7
A
31 34anti-parallel
Strand 8
A
122 125parallel
Strand 9
A
40 43anti-parallel
Strand 10
A
96 107parallel
Strand 11
A
80 93anti-parallel
Strand 12
A
67 77anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
194 201anti-parallel
Strand 4
A
204 213anti-parallel
Strand 5
A
298 301parallel
Strand 6
A
220 222anti-parallel
Strand 7
A
289 291parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
284 287anti-parallel
Strand 4
A
274 276anti-parallel
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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 186first strand
Strand 2
B
319 325anti-parallel
Strand 3
B
309 314anti-parallel
Strand 4
B
153 157anti-parallel
Strand 5
B
165 170anti-parallel
Strand 6
B
14 17anti-parallel
Strand 7
B
31 34anti-parallel
Strand 8
B
122 125parallel
Strand 9
B
40 43anti-parallel
Strand 10
B
96 107parallel
Strand 11
B
80 93anti-parallel
Strand 12
B
21 22anti-parallel
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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 186first strand
Strand 2
B
319 325anti-parallel
Strand 3
B
309 314anti-parallel
Strand 4
B
153 157anti-parallel
Strand 5
B
165 170anti-parallel
Strand 6
B
14 17anti-parallel
Strand 7
B
31 34anti-parallel
Strand 8
B
122 125parallel
Strand 9
B
40 43anti-parallel
Strand 10
B
96 107parallel
Strand 11
B
80 93anti-parallel
Strand 12
B
67 77anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
257 260anti-parallel
Strand 3
B
194 201anti-parallel
Strand 4
B
204 213anti-parallel
Strand 5
B
298 301parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
289 291parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
245 248anti-parallel
Strand 3
B
281 287anti-parallel
Strand 4
B
274 277anti-parallel
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