Analysis of interatomic Contacts of Structural Units in PDB entry:
1MIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MIR entry

There are 2 chains in PDB entry 1MIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10PHE 260
B
 SER 10PHE 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1MIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 20Right-handed alpha
Helix 2
2
A
35 41Right-handed alpha
Helix 3
3
A
7 10Right-handed alpha
Helix 4
4
A
15 18Right-handed 310
Helix 5
5
A
29 46Right-handed alpha
Helix 6
6
A
56 62Right-handed alpha
Helix 7
7
A
64 66Right-handed 310
Helix 8
8
A
70 72Right-handed 310
Helix 9
9
A
76 85Right-handed alpha
Helix 10
10
A
140 142Right-handed 310
Helix 11
11
A
157 167Right-handed alpha
Helix 12
12
A
178 182Right-handed 310
Helix 13
13
A
239 241Right-handed 310
Helix 14
14
A
254 256Right-handed 310
Helix 15
15
B
11 20Right-handed alpha
Helix 16
16
B
35 41Right-handed alpha
Helix 17
17
B
7 10Right-handed alpha
Helix 18
18
B
15 18Right-handed 310
Helix 19
19
B
29 46Right-handed alpha
Helix 20
20
B
56 62Right-handed alpha
Helix 21
21
B
64 66Right-handed 310
Helix 22
22
B
70 72Right-handed 310
Helix 23
23
B
76 85Right-handed alpha
Helix 24
24
B
140 142Right-handed 310
Helix 25
25
B
157 167Right-handed alpha
Helix 26
26
B
178 182Right-handed 310
Helix 27
27
B
239 241Right-handed 310
Helix 28
28
B
254 256Right-handed 310
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There are 8 sheets in PDB entry 1MIR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
212 218anti-parallel
Strand 3
A
230 234anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
212 218anti-parallel
Strand 3
B
230 234anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
183 186anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 153first strand
Strand 2
A
246 251anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 177first strand
Strand 2
A
195 203anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
183 186anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 153first strand
Strand 2
B
246 251anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 177first strand
Strand 2
B
195 203anti-parallel
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