Analysis of interatomic Contacts of Structural Units in PDB entry:
1MIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MIW entry

There are 2 chains in PDB entry 1MIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1CYS 404
B
 MSE 1CYS 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 1MIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
26 35Right-handed alpha
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
64 66Right-handed 310
Helix 5
5
A
103 110Right-handed alpha
Helix 6
6
A
114 117Right-handed 310
Helix 7
7
A
131 139Right-handed alpha
Helix 8
8
A
146 154Right-handed alpha
Helix 9
9
A
155 169Right-handed alpha
Helix 10
10
A
173 184Right-handed alpha
Helix 11
11
A
185 190Right-handed 310
Helix 12
12
A
191 204Right-handed alpha
Helix 13
13
A
207 218Right-handed alpha
Helix 14
14
A
230 237Right-handed alpha
Helix 15
15
A
238 240Right-handed 310
Helix 16
16
A
241 245Right-handed 310
Helix 17
17
A
247 259Right-handed alpha
Helix 18
18
A
263 271Right-handed alpha
Helix 19
19
A
274 291Right-handed alpha
Helix 20
20
A
293 297Right-handed 310
Helix 21
21
A
298 322Right-handed alpha
Helix 22
22
A
325 337Right-handed alpha
Helix 23
23
A
343 347Right-handed 310
Helix 24
24
A
350 359Right-handed alpha
Helix 25
25
A
364 379Right-handed alpha
Helix 26
26
A
385 398Right-handed alpha
Helix 27
27
A
398 404Right-handed alpha
Helix 28
28
B
2 18Right-handed alpha
Helix 29
29
B
26 35Right-handed alpha
Helix 30
30
B
48 56Right-handed alpha
Helix 31
31
B
64 66Right-handed 310
Helix 32
32
B
103 110Right-handed alpha
Helix 33
33
B
114 117Right-handed 310
Helix 34
34
B
131 139Right-handed alpha
Helix 35
35
B
146 154Right-handed alpha
Helix 36
36
B
155 169Right-handed alpha
Helix 37
37
B
173 184Right-handed alpha
Helix 38
38
B
185 190Right-handed 310
Helix 39
39
B
191 204Right-handed alpha
Helix 40
40
B
207 218Right-handed alpha
Helix 41
41
B
230 237Right-handed alpha
Helix 42
42
B
238 240Right-handed 310
Helix 43
43
B
241 245Right-handed 310
Helix 44
44
B
247 259Right-handed alpha
Helix 45
45
B
263 271Right-handed alpha
Helix 46
46
B
274 291Right-handed alpha
Helix 47
47
B
293 297Right-handed 310
Helix 48
48
B
298 306Right-handed alpha
Helix 49
49
B
306 322Right-handed alpha
Helix 50
50
B
325 337Right-handed alpha
Helix 51
51
B
343 347Right-handed 310
Helix 52
52
B
350 359Right-handed alpha
Helix 53
53
B
364 379Right-handed alpha
Helix 54
54
B
385 398Right-handed alpha
Helix 55
55
B
398 404Right-handed alpha
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There are 6 sheets in PDB entry 1MIW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
42 45parallel
Strand 5
A
22 25anti-parallel
Strand 6
A
119 120anti-parallel
Strand 7
A
126 127anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
99 100anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
171 172parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
68 73anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
42 45parallel
Strand 5
B
22 25anti-parallel
Strand 6
B
119 120anti-parallel
Strand 7
B
126 127anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
99 100anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
171 172parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il