Analysis of interatomic Contacts of Structural Units in PDB entry:
1MIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MIY entry

There are 2 chains in PDB entry 1MIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 404
B
 MET 1CYS 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1MIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
26 35Right-handed alpha
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
103 109Right-handed alpha
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
131 139Right-handed alpha
Helix 7
7
A
146 154Right-handed alpha
Helix 8
8
A
156 168Right-handed alpha
Helix 9
9
A
173 184Right-handed alpha
Helix 10
10
A
185 190Right-handed 310
Helix 11
11
A
191 203Right-handed alpha
Helix 12
12
A
207 218Right-handed alpha
Helix 13
13
A
230 237Right-handed alpha
Helix 14
14
A
238 240Right-handed 310
Helix 15
15
A
241 245Right-handed 310
Helix 16
16
A
247 259Right-handed alpha
Helix 17
17
A
263 271Right-handed alpha
Helix 18
18
A
274 291Right-handed alpha
Helix 19
19
A
293 297Right-handed 310
Helix 20
20
A
298 306Right-handed alpha
Helix 21
21
A
306 322Right-handed alpha
Helix 22
22
A
325 337Right-handed alpha
Helix 23
23
A
350 359Right-handed alpha
Helix 24
24
A
363 378Right-handed alpha
Helix 25
25
A
385 398Right-handed alpha
Helix 26
26
A
398 403Right-handed alpha
Helix 27
27
B
2 18Right-handed alpha
Helix 28
28
B
26 35Right-handed alpha
Helix 29
29
B
48 56Right-handed alpha
Helix 30
30
B
103 109Right-handed alpha
Helix 31
31
B
113 117Right-handed 310
Helix 32
32
B
131 139Right-handed alpha
Helix 33
33
B
146 154Right-handed alpha
Helix 34
34
B
156 168Right-handed alpha
Helix 35
35
B
173 184Right-handed alpha
Helix 36
36
B
185 190Right-handed 310
Helix 37
37
B
191 203Right-handed alpha
Helix 38
38
B
207 218Right-handed alpha
Helix 39
39
B
230 237Right-handed alpha
Helix 40
40
B
238 240Right-handed 310
Helix 41
41
B
241 245Right-handed 310
Helix 42
42
B
247 259Right-handed alpha
Helix 43
43
B
263 271Right-handed alpha
Helix 44
44
B
274 291Right-handed alpha
Helix 45
45
B
293 297Right-handed 310
Helix 46
46
B
298 306Right-handed alpha
Helix 47
47
B
306 322Right-handed alpha
Helix 48
48
B
325 336Right-handed alpha
Helix 49
49
B
350 359Right-handed alpha
Helix 50
50
B
363 378Right-handed alpha
Helix 51
51
B
385 398Right-handed alpha
Helix 52
52
B
398 403Right-handed alpha
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There are 6 sheets in PDB entry 1MIY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
42 45parallel
Strand 5
A
22 25anti-parallel
Strand 6
A
119 120anti-parallel
Strand 7
A
126 127anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
99 100anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
171 172parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
68 73anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
42 45parallel
Strand 5
B
22 25anti-parallel
Strand 6
B
119 121anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
99 100anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
171 172parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il