Analysis of interatomic Contacts of Structural Units in PDB entry:
1MJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MJ1 entry

There are 30 chains in PDB entry 1MJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 G 1 A 9
D
 C 11 G 15
D
 G 18 C 25
D
 C 27 A 31
D
 U 33 U 33
D
 A 35 A 36
D
 A 38 A 38
D
 U 41 G 45
D
 U 47 C 48
D
 U 50 G 53
D
 C 56 G 57
D
 U 59 A 76
C
 G 1 A 9
C
 C 11 G 15
C
 G 18 C 25
C
 C 27 A 31
C
 U 33 U 33
C
 A 35 A 36
C
 A 38 A 38
C
 U 41 G 45
C
 U 47 C 48
C
 U 50 G 53
C
 C 56 G 57
C
 U 59 A 76
Q
 G 1 C 41
R
 G 1 G 27
A
 ALA 1GLU 405
O
 PRO 1ALA 124
P
 ALA 1LYS 125
L
 GLN 1VAL 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1MJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 39Right-handed alpha
Helix 2
2
A
46 51Right-handed alpha
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
85 87Right-handed 310
Helix 5
5
A
88 97Right-handed alpha
Helix 6
6
A
113 126Right-handed alpha
Helix 7
7
A
137 141Right-handed 310
Helix 8
8
A
143 161Right-handed alpha
Helix 9
9
A
174 186Right-handed alpha
Helix 10
10
A
193 209Right-handed alpha
Helix 11
11
A
294 298Right-handed 310
Helix 12
12
A
324 328Right-handed 310
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There are 4 sheets in PDB entry 1MJ1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
10 17parallel
Strand 4
A
102 107parallel
Strand 5
A
131 136parallel
Strand 6
A
170 172parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 231first strand
Strand 2
A
235 244anti-parallel
Strand 3
A
285 290anti-parallel
Strand 4
A
263 271anti-parallel
Strand 5
A
252 256anti-parallel
Strand 6
A
303 305anti-parallel
Strand 7
A
222 231anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
279 281anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 322first strand
Strand 2
A
367 378anti-parallel
Strand 3
A
347 355anti-parallel
Strand 4
A
341 344anti-parallel
Strand 5
A
385 390anti-parallel
Strand 6
A
393 403anti-parallel
Strand 7
A
313 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il