Analysis of interatomic Contacts of Structural Units in PDB entry:
1MJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MJ3 entry

There are 6 chains in PDB entry 1MJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 31HIS 290
B
 ALA 31HIS 290
C
 ALA 31HIS 290
D
 ALA 31HIS 290
E
 ALA 31HIS 290
F
 ALA 31HIS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 1MJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 45Right-handed 310
Helix 2
2
A
54 58Right-handed 310
Helix 3
3
A
62 79Right-handed alpha
Helix 4
4
A
99 104Right-handed alpha
Helix 5
5
A
107 114Right-handed alpha
Helix 6
6
A
118 126Right-handed 310
Helix 7
7
A
140 149Right-handed alpha
Helix 8
8
A
162 168Right-handed 310
Helix 9
9
A
177 184Right-handed alpha
Helix 10
10
A
184 195Right-handed alpha
Helix 11
11
A
200 206Right-handed alpha
Helix 12
12
A
217 232Right-handed alpha
Helix 13
13
A
233 246Right-handed alpha
Helix 14
14
A
247 249Right-handed 310
Helix 15
15
A
251 266Right-handed alpha
Helix 16
16
A
269 281Right-handed alpha
Helix 17
17
B
42 45Right-handed 310
Helix 18
18
B
54 58Right-handed 310
Helix 19
19
B
62 79Right-handed alpha
Helix 20
20
B
99 104Right-handed alpha
Helix 21
21
B
107 114Right-handed alpha
Helix 22
22
B
118 126Right-handed 310
Helix 23
23
B
140 149Right-handed alpha
Helix 24
24
B
162 168Right-handed 310
Helix 25
25
B
177 184Right-handed alpha
Helix 26
26
B
184 195Right-handed alpha
Helix 27
27
B
200 206Right-handed alpha
Helix 28
28
B
217 232Right-handed alpha
Helix 29
29
B
233 247Right-handed alpha
Helix 30
30
B
251 267Right-handed alpha
Helix 31
31
B
269 281Right-handed alpha
Helix 32
32
C
42 45Right-handed 310
Helix 33
33
C
54 58Right-handed 310
Helix 34
34
C
62 79Right-handed alpha
Helix 35
35
C
99 104Right-handed alpha
Helix 36
36
C
107 114Right-handed alpha
Helix 37
37
C
121 126Right-handed 310
Helix 38
38
C
140 149Right-handed alpha
Helix 39
39
C
162 168Right-handed 310
Helix 40
40
C
177 184Right-handed alpha
Helix 41
41
C
184 195Right-handed alpha
Helix 42
42
C
200 206Right-handed alpha
Helix 43
43
C
217 231Right-handed alpha
Helix 44
44
C
233 246Right-handed alpha
Helix 45
45
C
247 249Right-handed 310
Helix 46
46
C
251 267Right-handed alpha
Helix 47
47
C
269 281Right-handed alpha
Helix 48
48
D
42 45Right-handed 310
Helix 49
49
D
54 58Right-handed 310
Helix 50
50
D
62 79Right-handed alpha
Helix 51
51
D
100 105Right-handed alpha
Helix 52
52
D
107 114Right-handed alpha
Helix 53
53
D
117 126Right-handed 310
Helix 54
54
D
140 149Right-handed alpha
Helix 55
55
D
162 168Right-handed 310
Helix 56
56
D
177 184Right-handed alpha
Helix 57
57
D
184 195Right-handed alpha
Helix 58
58
D
200 206Right-handed alpha
Helix 59
59
D
214 216Right-handed 310
Helix 60
60
D
217 232Right-handed alpha
Helix 61
61
D
233 247Right-handed alpha
Helix 62
62
D
251 266Right-handed alpha
Helix 63
63
D
269 281Right-handed alpha
Helix 64
64
E
42 45Right-handed 310
Helix 65
65
E
54 58Right-handed 310
Helix 66
66
E
62 79Right-handed alpha
Helix 67
67
E
99 104Right-handed alpha
Helix 68
68
E
107 114Right-handed alpha
Helix 69
69
E
118 126Right-handed 310
Helix 70
70
E
140 149Right-handed alpha
Helix 71
71
E
162 168Right-handed 310
Helix 72
72
E
177 184Right-handed alpha
Helix 73
73
E
184 195Right-handed alpha
Helix 74
74
E
200 206Right-handed alpha
Helix 75
75
E
217 232Right-handed alpha
Helix 76
76
E
233 246Right-handed alpha
Helix 77
77
E
247 249Right-handed 310
Helix 78
78
E
251 267Right-handed alpha
Helix 79
79
E
269 281Right-handed alpha
Helix 80
80
F
42 45Right-handed 310
Helix 81
81
F
54 58Right-handed 310
Helix 82
82
F
62 79Right-handed alpha
Helix 83
83
F
99 104Right-handed alpha
Helix 84
84
F
107 114Right-handed alpha
Helix 85
85
F
117 126Right-handed 310
Helix 86
86
F
140 149Right-handed alpha
Helix 87
87
F
162 168Right-handed 310
Helix 88
88
F
177 184Right-handed alpha
Helix 89
89
F
184 195Right-handed alpha
Helix 90
90
F
200 206Right-handed alpha
Helix 91
91
F
217 231Right-handed alpha
Helix 92
92
F
233 247Right-handed alpha
Helix 93
93
F
251 267Right-handed alpha
Helix 94
94
F
269 281Right-handed alpha
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There are 12 sheets in PDB entry 1MJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
84 88parallel
Strand 4
A
130 134parallel
Strand 5
A
151 155parallel
Strand 6
A
211 213parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
137 139parallel
Strand 3
A
159 161parallel
Strand 4
A
198 199anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
84 88parallel
Strand 4
B
130 134parallel
Strand 5
B
151 155parallel
Strand 6
B
211 213parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
137 139parallel
Strand 3
B
159 161parallel
Strand 4
B
198 199anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 41first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
84 88parallel
Strand 4
C
130 134parallel
Strand 5
C
151 155parallel
Strand 6
C
211 213parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
137 139parallel
Strand 3
C
159 161parallel
Strand 4
C
198 199anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 41first strand
Strand 2
D
47 52anti-parallel
Strand 3
D
84 88parallel
Strand 4
D
130 134parallel
Strand 5
D
151 155parallel
Strand 6
D
211 213parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 95first strand
Strand 2
D
137 139parallel
Strand 3
D
159 161parallel
Strand 4
D
198 199anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 41first strand
Strand 2
E
47 52anti-parallel
Strand 3
E
84 88parallel
Strand 4
E
130 134parallel
Strand 5
E
151 155parallel
Strand 6
E
211 213parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 95first strand
Strand 2
E
137 139parallel
Strand 3
E
159 161parallel
Strand 4
E
198 199anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 41first strand
Strand 2
F
47 52anti-parallel
Strand 3
F
84 88parallel
Strand 4
F
130 134parallel
Strand 5
F
151 155parallel
Strand 6
F
211 213parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
93 95first strand
Strand 2
F
137 139parallel
Strand 3
F
159 161parallel
Strand 4
F
198 199anti-parallel
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