Analysis of interatomic Contacts of Structural Units in PDB entry:
1MJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MJE entry

There are 3 chains in PDB entry 1MJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 501 T 506
B
 PRO 7HIS 63
A
 LYS 2399TRP 3110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1MJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
55 60Right-handed alpha
Helix 2
2
A
2402 2404Right-handed 310
Helix 3
3
A
2405 2421Right-handed alpha
Helix 4
4
A
2429 2437Right-handed alpha
Helix 5
5
A
2445 2449Right-handed 310
Helix 6
6
A
2517 2527Right-handed alpha
Helix 7
7
A
2539 2557Right-handed alpha
Helix 8
8
A
2569 2585Right-handed alpha
Helix 9
9
A
2591 2597Right-handed alpha
Helix 10
10
A
2654 2664Right-handed alpha
Helix 11
11
A
2700 2702Right-handed 310
Helix 12
12
A
2764 2768Right-handed 310
Helix 13
13
A
2769 2791Right-handed alpha
Helix 14
14
A
2914 2918Right-handed 310
Helix 15
15
A
2960 2968Right-handed alpha
Helix 16
16
A
2976 2981Right-handed 310
Helix 17
17
A
3070 3087Right-handed alpha
Helix 18
18
A
3093 3105Right-handed alpha
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There are 4 sheets in PDB entry 1MJE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
A
2442 2443parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2678 2680first strand
Strand 2
A
2696 2699anti-parallel
Strand 3
A
2648 2653parallel
Strand 4
A
2640 2643anti-parallel
Strand 5
A
2607 2613anti-parallel
Strand 6
A
2671 2674anti-parallel
Strand 7
A
2704 2706anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2760 2763first strand
Strand 2
A
2751 2754anti-parallel
Strand 3
A
2886 2896anti-parallel
Strand 4
A
2736 2746anti-parallel
Strand 5
A
2924 2934anti-parallel
Strand 6
A
2944 2957anti-parallel
Strand 7
A
2904 2909parallel
Strand 8
A
2886 2896anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2991 2999first strand
Strand 2
A
3011 3013anti-parallel
Strand 3
A
3019 3024anti-parallel
Strand 4
A
3055 3058parallel
Strand 5
A
3037 3046anti-parallel
Strand 6
A
2991 2999anti-parallel
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