Analysis of interatomic Contacts of Structural Units in PDB entry:
1MJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MJH entry

There are 2 chains in PDB entry 1MJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3SER 162
B
 VAL 1003SER 1162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1MJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
A
67 95Right-handed alpha
Helix 4
4
A
108 118Right-handed alpha
Helix 5
5
A
141 149Right-handed alpha
Helix 6
6
B
1016 1028Right-handed alpha
Helix 7
7
B
1044 1047Right-handed alpha
Helix 8
8
B
1066 1095Right-handed alpha
Helix 9
9
B
1108 1118Right-handed alpha
Helix 10
10
B
1141 1149Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1MJH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
35 43parallel
Strand 3
A
98 106parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
154 157parallel
Strand 3
B
1154 1157anti-parallel
Strand 4
B
1124 1127parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1007 1011first strand
Strand 2
B
1035 1043parallel
Strand 3
B
1098 1106parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il