Analysis of interatomic Contacts of Structural Units in PDB entry:
1MJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MJT entry

There are 2 chains in PDB entry 1MJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1LYS 346
B
 HIS 0LYS 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1MJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 17Right-handed alpha
Helix 2
2
A
20 38Right-handed alpha
Helix 3
3
A
44 58Right-handed alpha
Helix 4
4
A
64 71Right-handed 310
Helix 5
5
A
81 98Right-handed alpha
Helix 6
6
A
99 101Right-handed 310
Helix 7
7
A
133 135Right-handed 310
Helix 8
8
A
136 147Right-handed alpha
Helix 9
9
A
175 179Right-handed 310
Helix 10
10
A
189 196Right-handed 310
Helix 11
11
A
227 233Right-handed alpha
Helix 12
12
A
233 238Right-handed alpha
Helix 13
13
A
244 252Right-handed alpha
Helix 14
14
A
258 261Right-handed 310
Helix 15
15
A
262 282Right-handed alpha
Helix 16
16
A
288 305Right-handed alpha
Helix 17
17
A
313 318Right-handed alpha
Helix 18
18
A
322 331Right-handed 310
Helix 19
19
B
0 17Right-handed alpha
Helix 20
20
B
20 39Right-handed alpha
Helix 21
21
B
44 58Right-handed alpha
Helix 22
22
B
64 71Right-handed 310
Helix 23
23
B
81 98Right-handed alpha
Helix 24
24
B
99 101Right-handed 310
Helix 25
25
B
133 135Right-handed 310
Helix 26
26
B
136 146Right-handed alpha
Helix 27
27
B
175 179Right-handed 310
Helix 28
28
B
189 196Right-handed 310
Helix 29
29
B
228 233Right-handed alpha
Helix 30
30
B
233 238Right-handed alpha
Helix 31
31
B
244 252Right-handed alpha
Helix 32
32
B
258 261Right-handed 310
Helix 33
33
B
262 282Right-handed alpha
Helix 34
34
B
288 306Right-handed alpha
Helix 35
35
B
313 318Right-handed alpha
Helix 36
36
B
322 331Right-handed 310
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There are 9 sheets in PDB entry 1MJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
105 109parallel
Strand 3
A
222 223anti-parallel
Strand 4
A
204 205anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
170 172anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
198 200anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
341 344anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
105 109parallel
Strand 3
B
222 223anti-parallel
Strand 4
B
204 205anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
160 163anti-parallel
Strand 3
B
170 172anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
198 200anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
341 344anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
286 287parallel
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