Analysis of interatomic Contacts of Structural Units in PDB entry:
1MK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MK7 entry

There are 4 chains in PDB entry 1MK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 737GLU 749
B
 PRO 209LEU 400
C
 SER 736GLU 749
D
 PRO 209LEU 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1MK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
744 749Right-handed alpha
Helix 2
2
B
209 225Right-handed alpha
Helix 3
3
B
231 248Right-handed alpha
Helix 4
4
B
261 265Right-handed 310
Helix 5
5
B
267 274Right-handed 310
Helix 6
6
B
275 285Right-handed alpha
Helix 7
7
B
290 304Right-handed alpha
Helix 8
8
B
354 356Right-handed 310
Helix 9
9
B
384 400Right-handed alpha
Helix 10
10
D
209 225Right-handed alpha
Helix 11
11
D
231 248Right-handed alpha
Helix 12
12
D
261 265Right-handed 310
Helix 13
13
D
267 274Right-handed 310
Helix 14
14
D
275 286Right-handed alpha
Helix 15
15
D
290 304Right-handed alpha
Helix 16
16
D
354 356Right-handed 310
Helix 17
17
D
384 400Right-handed alpha
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There are 4 sheets in PDB entry 1MK7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 741first strand
Strand 2
D
358 362anti-parallel
Strand 3
D
365 369anti-parallel
Strand 4
D
378 381anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 317first strand
Strand 2
B
326 332anti-parallel
Strand 3
B
336 341anti-parallel
Strand 4
B
347 352anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 381first strand
Strand 2
B
365 369anti-parallel
Strand 3
B
358 362anti-parallel
Strand 4
C
740 741anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
311 317first strand
Strand 2
D
326 332anti-parallel
Strand 3
D
336 341anti-parallel
Strand 4
D
347 352anti-parallel
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