Analysis of interatomic Contacts of Structural Units in PDB entry:
1MKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MKA entry

There are 2 chains in PDB entry 1MKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1PHE 171
B
 VAL 1PHE 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 1MKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
65 69Right-handed 310
Helix 3
3
A
79 96Right-handed alpha
Helix 4
4
B
9 17Right-handed alpha
Helix 5
5
B
65 69Right-handed 310
Helix 6
6
B
79 96Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1MKA.

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
52 60anti-parallel
Strand 4
A
122 136anti-parallel
Strand 5
A
138 150anti-parallel
Strand 6
A
152 165anti-parallel
Strand 7
A
102 114anti-parallel
Strand 8
B
102 114anti-parallel
Strand 9
B
152 165anti-parallel
Strand 10
B
138 150anti-parallel
Strand 11
B
122 136anti-parallel
Strand 12
B
52 60anti-parallel
Strand 13
B
37 43anti-parallel
Strand 14
B
5 9anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il