Analysis of interatomic Contacts of Structural Units in PDB entry:
1MKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MKJ entry

There is 1 chain in PDB entry 1MKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1MKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 25Right-handed alpha
Helix 2
2
A
57 75Right-handed alpha
Helix 3
3
A
90 96Right-handed alpha
Helix 4
4
A
106 120Right-handed alpha
Helix 5
5
A
175 190Right-handed alpha
Helix 6
6
A
196 204Right-handed alpha
Helix 7
7
A
255 271Right-handed alpha
Helix 8
8
A
276 279Right-handed 310
Helix 9
9
A
280 286Right-handed alpha
Helix 10
10
A
286 291Right-handed alpha
Helix 11
11
A
305 307Right-handed 310
Helix 12
12
A
308 324Right-handed alpha
Helix 13
13
A
336 349Right-handed alpha
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There are 4 sheets in PDB entry 1MKJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
326 329anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
126 138anti-parallel
Strand 3
A
171 173anti-parallel
Strand 4
A
126 138anti-parallel
Strand 5
A
205 216anti-parallel
Strand 6
A
222 231anti-parallel
Strand 7
A
333 334anti-parallel
Strand 8
A
222 231anti-parallel
Strand 9
A
79 84parallel
Strand 10
A
295 302parallel
Strand 11
A
10 15parallel
Strand 12
A
50 52parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
45 47anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
163 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il