Analysis of interatomic Contacts of Structural Units in PDB entry:
1MKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MKZ entry

There are 2 chains in PDB entry 1MKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 172
B
 SER 2SER 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1MKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 26Right-handed 310
Helix 2
2
A
27 40Right-handed alpha
Helix 3
3
A
53 67Right-handed alpha
Helix 4
4
A
86 92Right-handed alpha
Helix 5
5
A
93 95Right-handed 310
Helix 6
6
A
99 115Right-handed alpha
Helix 7
7
A
116 121Right-handed 310
Helix 8
8
A
139 150Right-handed alpha
Helix 9
9
A
150 156Right-handed alpha
Helix 10
10
A
164 168Right-handed 310
Helix 11
11
B
23 26Right-handed 310
Helix 12
12
B
27 41Right-handed alpha
Helix 13
13
B
53 67Right-handed alpha
Helix 14
14
B
86 92Right-handed alpha
Helix 15
15
B
93 95Right-handed 310
Helix 16
16
B
99 115Right-handed alpha
Helix 17
17
B
116 121Right-handed 310
Helix 18
18
B
139 150Right-handed alpha
Helix 19
19
B
150 156Right-handed alpha
Helix 20
20
B
164 168Right-handed 310
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There are 2 sheets in PDB entry 1MKZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 50first strand
Strand 2
A
12 18parallel
Strand 3
A
72 76parallel
Strand 4
A
131 136parallel
Strand 5
A
124 128anti-parallel
Strand 6
A
97 98anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 50first strand
Strand 2
B
12 18parallel
Strand 3
B
72 76parallel
Strand 4
B
131 136parallel
Strand 5
B
124 128anti-parallel
Strand 6
B
97 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il