Analysis of interatomic Contacts of Structural Units in PDB entry:
1ML4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ML4 entry

There is 1 chain in PDB entry 1ML4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ILE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1ML4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
15 37Right-handed alpha
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
78 87Right-handed 310
Helix 5
5
A
89 98Right-handed alpha
Helix 6
6
A
112 120Right-handed alpha
Helix 7
7
A
135 150Right-handed alpha
Helix 8
8
A
167 177Right-handed alpha
Helix 9
9
A
178 180Right-handed 310
Helix 10
10
A
189 193Right-handed 310
Helix 11
11
A
195 205Right-handed alpha
Helix 12
12
A
215 220Right-handed alpha
Helix 13
13
A
231 235Right-handed 310
Helix 14
14
A
237 243Right-handed alpha
Helix 15
15
A
253 258Right-handed 310
Helix 16
16
A
275 281Right-handed 310
Helix 17
17
A
285 292Right-handed alpha
Helix 18
18
A
292 305Right-handed alpha
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There are 2 sheets in PDB entry 1ML4. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
46 51parallel
Strand 3
A
103 108parallel
Strand 4
A
125 130parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
182 187parallel
Strand 3
A
156 161parallel
Strand 4
A
224 227parallel
Strand 5
A
263 265parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il