Analysis of interatomic Contacts of Structural Units in PDB entry:
1ML9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ML9 entry

There is 1 chain in PDB entry 1ML9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 25CYS 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1ML9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 63Right-handed 310
Helix 2
2
A
72 76Right-handed 310
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
115 122Right-handed alpha
Helix 5
5
A
141 146Right-handed alpha
Helix 6
6
A
184 195Right-handed alpha
Helix 7
7
A
196 199Right-handed 310
Helix 8
8
A
200 204Right-handed alpha
Helix 9
9
A
218 223Right-handed alpha
Helix 10
10
A
235 240Right-handed 310
Helix 11
11
A
256 263Right-handed 310
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There are 4 sheets in PDB entry 1ML9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
151 155parallel
Strand 3
A
161 164anti-parallel
Strand 4
A
278 281anti-parallel
Strand 5
A
241 242parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
233 234parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
181 183parallel
Strand 3
A
227 229anti-parallel
Strand 4
A
205 207anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
248 254parallel
Strand 3
A
264 269anti-parallel
Strand 4
A
174 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il