Analysis of interatomic Contacts of Structural Units in PDB entry:
1MLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MLI entry

There are 10 chains in PDB entry 1MLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 96
B
 MET 1ARG 96
C
 MET 1ARG 96
D
 MET 1ARG 96
E
 MET 1ARG 96
F
 MET 1ARG 96
G
 MET 1ARG 96
H
 MET 1ARG 96
I
 MET 1ARG 96
J
 MET 1ARG 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1MLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
18 37Right-handed alpha
Helix 2
B
A
61 71Right-handed alpha
Helix 3
C
B
18 37Right-handed alpha
Helix 4
D
B
61 71Right-handed alpha
Helix 5
E
C
18 37Right-handed alpha
Helix 6
F
C
61 71Right-handed alpha
Helix 7
G
D
18 37Right-handed alpha
Helix 8
H
D
61 71Right-handed alpha
Helix 9
I
E
18 37Right-handed alpha
Helix 10
J
E
61 71Right-handed alpha
Helix 11
K
F
18 37Right-handed alpha
Helix 12
L
F
61 71Right-handed alpha
Helix 13
M
G
18 37Right-handed alpha
Helix 14
N
G
61 71Right-handed alpha
Helix 15
O
H
18 37Right-handed alpha
Helix 16
P
H
61 71Right-handed alpha
Helix 17
Q
I
18 37Right-handed alpha
Helix 18
R
I
61 71Right-handed alpha
Helix 19
S
J
18 37Right-handed alpha
Helix 20
T
J
61 71Right-handed alpha
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There are 10 sheets in PDB entry 1MLI. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6, S7, S8, S9, S10,

There are 4 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 47first strand
Strand 2
A
50 58anti-parallel
Strand 3
A
1 11anti-parallel
Strand 4
A
76 84anti-parallel
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There are 4 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 47first strand
Strand 2
B
50 58anti-parallel
Strand 3
B
1 11anti-parallel
Strand 4
B
76 84anti-parallel
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There are 4 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 47first strand
Strand 2
C
50 58anti-parallel
Strand 3
C
1 11anti-parallel
Strand 4
C
76 84anti-parallel
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There are 4 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 47first strand
Strand 2
D
50 58anti-parallel
Strand 3
D
1 11anti-parallel
Strand 4
D
76 84anti-parallel
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There are 4 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 47first strand
Strand 2
E
50 58anti-parallel
Strand 3
E
1 11anti-parallel
Strand 4
E
76 84anti-parallel
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There are 4 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
39 47first strand
Strand 2
F
50 58anti-parallel
Strand 3
F
1 11anti-parallel
Strand 4
F
76 84anti-parallel
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There are 4 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
39 47first strand
Strand 2
G
50 58anti-parallel
Strand 3
G
1 11anti-parallel
Strand 4
G
76 84anti-parallel
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There are 4 strands in S8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 47first strand
Strand 2
H
50 58anti-parallel
Strand 3
H
1 11anti-parallel
Strand 4
H
76 84anti-parallel
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There are 4 strands in S9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
39 47first strand
Strand 2
I
50 58anti-parallel
Strand 3
I
1 11anti-parallel
Strand 4
I
76 84anti-parallel
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There are 4 strands in S10 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
39 47first strand
Strand 2
J
50 58anti-parallel
Strand 3
J
1 11anti-parallel
Strand 4
J
76 84anti-parallel
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