Analysis of interatomic Contacts of Structural Units in PDB entry:
1MM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MM8 entry

There are 3 chains in PDB entry 1MM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 101 G 120
C
 C 201 C 220
A
 ALA 5GLY 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1MM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
24 41Right-handed alpha
Helix 3
3
A
45 50Right-handed alpha
Helix 4
4
A
53 66Right-handed alpha
Helix 5
5
A
70 87Right-handed alpha
Helix 6
6
A
105 111Right-handed 310
Helix 7
7
A
153 157Right-handed 310
Helix 8
8
A
160 162Right-handed 310
Helix 9
9
A
163 177Right-handed alpha
Helix 10
10
A
178 181Right-handed 310
Helix 11
11
A
188 192Right-handed 310
Helix 12
12
A
193 203Right-handed alpha
Helix 13
13
A
223 229Right-handed alpha
Helix 14
14
A
273 276Right-handed 310
Helix 15
15
A
308 321Right-handed alpha
Helix 16
16
A
323 333Right-handed alpha
Helix 17
17
A
337 341Right-handed 310
Helix 18
18
A
345 370Right-handed alpha
Helix 19
19
A
392 396Right-handed 310
Helix 20
20
A
398 409Right-handed alpha
Helix 21
21
A
423 434Right-handed alpha
Helix 22
22
A
445 471Right-handed alpha
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There are 3 sheets in PDB entry 1MM8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 241first strand
Strand 2
A
259 271anti-parallel
Strand 3
A
278 287anti-parallel
Strand 4
A
297 302anti-parallel
Strand 5
A
206 210anti-parallel
Strand 6
A
183 187parallel
Strand 7
A
92 103parallel
Strand 8
A
122 133anti-parallel
Strand 9
A
112 113anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 241first strand
Strand 2
A
259 271anti-parallel
Strand 3
A
278 287anti-parallel
Strand 4
A
297 302anti-parallel
Strand 5
A
206 210anti-parallel
Strand 6
A
183 187parallel
Strand 7
A
92 103parallel
Strand 8
A
122 133anti-parallel
Strand 9
A
139 148anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
254 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il