Analysis of interatomic Contacts of Structural Units in PDB entry:
1MML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MML entry

There is 1 chain in PDB entry 1MML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24LYS 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1MML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 28Right-handed alpha
Helix 2
2
A
34 37Right-handed alpha
Helix 3
3
A
68 83Right-handed alpha
Helix 4
4
A
116 121Right-handed alpha
Helix 5
5
A
132 138Right-handed alpha
Helix 6
6
A
155 157Right-handed 310
Helix 7
7
A
162 168Right-handed alpha
Helix 8
8
A
195 206Right-handed alpha
Helix 9
9
A
208 213Right-handed alpha
Helix 10
10
A
233 250Right-handed alpha
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There are 4 sheets in PDB entry 1MML. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
179 185anti-parallel
Strand 3
A
170 174anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
110 113anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
225 230anti-parallel
Strand 3
A
218 222anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
271 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il