Analysis of interatomic Contacts of Structural Units in PDB entry:
1MND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MND entry

There is 1 chain in PDB entry 1MND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LYS 690
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1MND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 5Right-handed 310
Helix 2
2
A
10 15Right-handed alpha
Helix 3
3
A
74 76Right-handed 310
Helix 4
4
A
91 93Right-handed 310
Helix 5
5
A
99 112Right-handed alpha
Helix 6
6
A
137 143Right-handed alpha
Helix 7
7
A
155 169Right-handed alpha
Helix 8
8
A
185 199Right-handed alpha
Helix 9
9
A
211 224Right-handed alpha
Helix 10
10
A
266 269Right-handed alpha
Helix 11
11
A
279 287Right-handed alpha
Helix 12
12
A
290 295Right-handed alpha
Helix 13
13
A
320 333Right-handed alpha
Helix 14
14
A
338 356Right-handed alpha
Helix 15
15
A
373 380Right-handed alpha
Helix 16
16
A
386 394Right-handed alpha
Helix 17
17
A
411 441Right-handed alpha
Helix 18
18
A
466 485Right-handed alpha
Helix 19
19
A
511 518Right-handed alpha
Helix 20
20
A
525 534Right-handed alpha
Helix 21
21
A
540 551Right-handed alpha
Helix 22
22
A
584 589Right-handed alpha
Helix 23
23
A
594 600Right-handed alpha
Helix 24
24
A
606 613Right-handed alpha
Helix 25
25
A
630 647Right-handed alpha
Helix 26
26
A
671 679Right-handed alpha
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There are 5 sheets in PDB entry 1MND. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
47 55anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
70 73anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
653 656parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 651first strand
Strand 2
A
173 176parallel
Strand 3
A
448 454parallel
Strand 4
A
241 247anti-parallel
Strand 5
A
253 260anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 399first strand
Strand 2
A
404 406anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 560first strand
Strand 2
A
568 570anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il