Analysis of interatomic Contacts of Structural Units in PDB entry:
1MOK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MOK entry

There are 4 chains in PDB entry 1MOK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LEU 523
B	LYS 2	LEU 523
C	LYS 2	LEU 523
D	LYS 2	LEU 523

There are 69 helices in PDB entry 1MOK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	26	Right-handed alpha
Helix 2	2	A	52	64	Right-handed alpha
Helix 3	3	A	86	106	Right-handed alpha
Helix 4	4	A	121	133	Right-handed alpha
Helix 5	5	A	133	146	Right-handed alpha
Helix 6	6	A	202	209	Right-handed alpha
Helix 7	7	A	223	236	Right-handed alpha
Helix 8	8	A	254	268	Right-handed alpha
Helix 9	9	A	318	325	Right-handed alpha
Helix 10	10	A	352	356	Right-handed 310
Helix 11	11	A	360	376	Right-handed alpha
Helix 12	12	A	403	410	Right-handed alpha
Helix 13	13	A	437	443	Right-handed alpha
Helix 14	14	A	446	450	Right-handed 310
Helix 15	15	A	474	489	Right-handed alpha
Helix 16	16	A	490	495	Right-handed alpha
Helix 17	17	A	506	517	Right-handed alpha
Helix 18	18	B	12	26	Right-handed alpha
Helix 19	19	B	52	65	Right-handed alpha
Helix 20	20	B	86	106	Right-handed alpha
Helix 21	21	B	121	133	Right-handed alpha
Helix 22	22	B	133	147	Right-handed alpha
Helix 23	23	B	204	209	Right-handed alpha
Helix 24	24	B	223	236	Right-handed alpha
Helix 25	25	B	254	268	Right-handed alpha
Helix 26	26	B	320	325	Right-handed alpha
Helix 27	27	B	352	356	Right-handed 310
Helix 28	28	B	360	376	Right-handed alpha
Helix 29	29	B	403	410	Right-handed alpha
Helix 30	30	B	437	443	Right-handed alpha
Helix 31	31	B	446	450	Right-handed 310
Helix 32	32	B	474	489	Right-handed alpha
Helix 33	33	B	490	496	Right-handed alpha
Helix 34	34	B	506	517	Right-handed alpha
Helix 35	35	C	7	9	Right-handed 310
Helix 36	36	C	12	26	Right-handed alpha
Helix 37	37	C	52	65	Right-handed alpha
Helix 38	38	C	86	106	Right-handed alpha
Helix 39	39	C	121	133	Right-handed alpha
Helix 40	40	C	133	147	Right-handed alpha
Helix 41	41	C	204	209	Right-handed alpha
Helix 42	42	C	223	236	Right-handed alpha
Helix 43	43	C	254	268	Right-handed alpha
Helix 44	44	C	318	325	Right-handed alpha
Helix 45	45	C	352	356	Right-handed 310
Helix 46	46	C	360	376	Right-handed alpha
Helix 47	47	C	403	410	Right-handed alpha
Helix 48	48	C	437	443	Right-handed alpha
Helix 49	49	C	446	450	Right-handed 310
Helix 50	50	C	474	489	Right-handed alpha
Helix 51	51	C	490	495	Right-handed alpha
Helix 52	52	C	506	517	Right-handed alpha
Helix 53	53	D	12	26	Right-handed alpha
Helix 54	54	D	52	65	Right-handed alpha
Helix 55	55	D	86	106	Right-handed alpha
Helix 56	56	D	121	131	Right-handed alpha
Helix 57	57	D	133	147	Right-handed alpha
Helix 58	58	D	202	209	Right-handed alpha
Helix 59	59	D	223	236	Right-handed alpha
Helix 60	60	D	254	267	Right-handed alpha
Helix 61	61	D	320	325	Right-handed alpha
Helix 62	62	D	352	356	Right-handed 310
Helix 63	63	D	360	376	Right-handed alpha
Helix 64	64	D	403	410	Right-handed alpha
Helix 65	65	D	437	443	Right-handed alpha
Helix 66	66	D	446	450	Right-handed 310
Helix 67	67	D	474	487	Right-handed alpha
Helix 68	68	D	490	496	Right-handed alpha
Helix 69	69	D	506	517	Right-handed alpha

There are 24 sheets in PDB entry 1MOK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	32	35	parallel
Strand 3	A	152	154	anti-parallel
Strand 4	A	69	72	parallel
Strand 5	A	46	49	parallel
Strand 6	A	178	180	parallel
Strand 7	A	348	350	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	165	168	anti-parallel
Strand 3	A	171	174	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	315	316	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	308	310	parallel
Strand 3	A	216	220	parallel
Strand 4	A	239	244	parallel
Strand 5	A	271	274	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	283	first strand
Strand 2	A	289	296	anti-parallel
Strand 3	A	299	303	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	396	401	anti-parallel
Strand 3	A	464	471	anti-parallel
Strand 4	A	452	458	anti-parallel
Strand 5	A	414	419	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	32	35	parallel
Strand 3	B	152	154	anti-parallel
Strand 4	B	69	72	parallel
Strand 5	B	46	49	parallel
Strand 6	B	178	180	parallel
Strand 7	B	348	350	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	165	168	anti-parallel
Strand 3	B	171	174	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	314	316	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	308	310	parallel
Strand 3	B	216	220	parallel
Strand 4	B	239	244	parallel
Strand 5	B	271	274	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	283	first strand
Strand 2	B	289	296	anti-parallel
Strand 3	B	299	304	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	392	first strand
Strand 2	B	396	401	anti-parallel
Strand 3	B	464	471	anti-parallel
Strand 4	B	452	458	anti-parallel
Strand 5	B	414	419	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	32	35	parallel
Strand 3	C	152	154	anti-parallel
Strand 4	C	69	73	parallel
Strand 5	C	46	49	parallel
Strand 6	C	178	180	parallel
Strand 7	C	348	350	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	165	168	anti-parallel
Strand 3	C	171	174	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	315	316	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	308	310	parallel
Strand 3	C	216	220	parallel
Strand 4	C	239	243	parallel
Strand 5	C	271	273	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	282	first strand
Strand 2	C	291	296	anti-parallel
Strand 3	C	299	304	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	392	first strand
Strand 2	C	396	401	anti-parallel
Strand 3	C	464	471	anti-parallel
Strand 4	C	452	458	anti-parallel
Strand 5	C	414	419	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	32	35	parallel
Strand 3	D	152	154	anti-parallel
Strand 4	D	69	73	parallel
Strand 5	D	46	49	parallel
Strand 6	D	178	180	parallel
Strand 7	D	348	350	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	165	168	anti-parallel
Strand 3	D	171	174	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	315	316	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	308	310	parallel
Strand 3	D	216	220	parallel
Strand 4	D	239	244	parallel
Strand 5	D	271	274	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	283	first strand
Strand 2	D	289	295	anti-parallel
Strand 3	D	300	304	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	392	first strand
Strand 2	D	396	401	anti-parallel
Strand 3	D	464	471	anti-parallel
Strand 4	D	452	458	anti-parallel
Strand 5	D	414	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MOK

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MOK