Analysis of interatomic Contacts of Structural Units in PDB entry:
1MOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MOM entry

There is 1 chain in PDB entry 1MOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ILE 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1MOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
11 23Right-handed alpha
Helix 2
A'
A
44 46Right-handed 310
Helix 3
B
A
86 92Right-handed alpha
Helix 4
C
A
111 118Right-handed alpha
Helix 5
B'
A
122 124Right-handed 310
Helix 6
D
A
129 139Right-handed alpha
Helix 7
E
A
144 155Right-handed alpha
Helix 8
C'
A
158 163Right-handed alpha
Helix 9
F
A
165 173Right-handed alpha
Helix 10
G
A
183 191Right-handed alpha
Helix 11
H
A
192 201Right-handed alpha
Helix 12
D'
A
231 236Right-handed pi
Helix 13
E'
A
243 246Right-handed 310
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There are 3 sheets in PDB entry 1MOM. Click on sheet of interest to get list of strands forming it: S1, S2, S3,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
46 54parallel
Strand 3
A
58 66anti-parallel
Strand 4
A
70 76anti-parallel
Strand 5
A
78 83anti-parallel
Strand 6
A
101 105parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
34 38anti-parallel
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There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 215first strand
Strand 2
A
223 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il