Analysis of interatomic Contacts of Structural Units in PDB entry:
1MP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MP5 entry

There are 4 chains in PDB entry 1MP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 289
B	MET 1	VAL 289
C	MET 1	VAL 289
D	MET 1	VAL 289

There are 63 helices in PDB entry 1MP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	18	Right-handed 310
Helix 2	2	A	25	29	Right-handed 310
Helix 3	3	A	37	47	Right-handed alpha
Helix 4	4	A	60	69	Right-handed alpha
Helix 5	5	A	71	75	Right-handed 310
Helix 6	6	A	90	95	Right-handed alpha
Helix 7	7	A	96	101	Right-handed alpha
Helix 8	8	A	118	127	Right-handed alpha
Helix 9	9	A	181	190	Right-handed alpha
Helix 10	10	A	199	209	Right-handed alpha
Helix 11	11	A	229	247	Right-handed alpha
Helix 12	12	A	253	261	Right-handed alpha
Helix 13	13	A	265	274	Right-handed alpha
Helix 14	14	A	275	277	Right-handed 310
Helix 15	15	A	279	289	Right-handed alpha
Helix 16	16	B	14	18	Right-handed 310
Helix 17	17	B	25	29	Right-handed 310
Helix 18	18	B	37	47	Right-handed alpha
Helix 19	19	B	59	69	Right-handed alpha
Helix 20	20	B	71	75	Right-handed 310
Helix 21	21	B	90	96	Right-handed alpha
Helix 22	22	B	96	101	Right-handed alpha
Helix 23	23	B	118	129	Right-handed alpha
Helix 24	24	B	142	145	Right-handed 310
Helix 25	25	B	182	188	Right-handed alpha
Helix 26	26	B	199	209	Right-handed alpha
Helix 27	27	B	229	248	Right-handed alpha
Helix 28	28	B	253	261	Right-handed alpha
Helix 29	29	B	265	277	Right-handed alpha
Helix 30	30	B	279	289	Right-handed alpha
Helix 31	31	C	14	18	Right-handed 310
Helix 32	32	C	19	24	Right-handed alpha
Helix 33	33	C	25	28	Right-handed 310
Helix 34	34	C	37	47	Right-handed alpha
Helix 35	35	C	60	69	Right-handed alpha
Helix 36	36	C	71	75	Right-handed 310
Helix 37	37	C	90	95	Right-handed alpha
Helix 38	38	C	96	101	Right-handed alpha
Helix 39	39	C	118	129	Right-handed alpha
Helix 40	40	C	142	145	Right-handed 310
Helix 41	41	C	182	189	Right-handed alpha
Helix 42	42	C	199	210	Right-handed alpha
Helix 43	43	C	229	248	Right-handed alpha
Helix 44	44	C	253	261	Right-handed alpha
Helix 45	45	C	265	274	Right-handed alpha
Helix 46	46	C	279	289	Right-handed alpha
Helix 47	47	D	14	18	Right-handed 310
Helix 48	48	D	19	24	Right-handed alpha
Helix 49	49	D	25	28	Right-handed 310
Helix 50	50	D	37	47	Right-handed alpha
Helix 51	51	D	60	69	Right-handed alpha
Helix 52	52	D	71	75	Right-handed 310
Helix 53	53	D	90	95	Right-handed alpha
Helix 54	54	D	96	101	Right-handed alpha
Helix 55	55	D	118	128	Right-handed alpha
Helix 56	56	D	142	145	Right-handed 310
Helix 57	57	D	182	190	Right-handed alpha
Helix 58	58	D	199	210	Right-handed alpha
Helix 59	59	D	229	248	Right-handed alpha
Helix 60	60	D	253	261	Right-handed alpha
Helix 61	61	D	265	274	Right-handed alpha
Helix 62	62	D	275	277	Right-handed 310
Helix 63	63	D	279	289	Right-handed alpha

There are 15 sheets in PDB entry 1MP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	133	139	parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	105	109	anti-parallel
Strand 5	A	5	9	parallel
Strand 6	A	51	56	parallel
Strand 7	A	77	82	parallel

Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	133	139	parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	147	151	anti-parallel
Strand 5	A	157	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	82	first strand
Strand 2	B	51	56	parallel
Strand 3	B	5	10	parallel
Strand 4	B	105	109	parallel
Strand 5	B	176	179	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	147	150	anti-parallel
Strand 3	B	171	173	anti-parallel
Strand 4	B	133	139	anti-parallel
Strand 5	B	213	218	parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	133	139	parallel
Strand 3	C	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	133	139	parallel
Strand 3	C	176	179	anti-parallel
Strand 4	C	105	109	anti-parallel
Strand 5	C	5	10	parallel
Strand 6	C	51	56	parallel
Strand 7	C	77	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	157	162	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	82	first strand
Strand 2	D	51	56	parallel
Strand 3	D	5	10	parallel
Strand 4	D	105	109	parallel
Strand 5	D	171	179	anti-parallel
Strand 6	D	133	139	anti-parallel
Strand 7	D	213	218	parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	151	first strand
Strand 2	D	157	162	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MP5