Analysis of interatomic Contacts of Structural Units in PDB entry:
1MP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MP8 entry

There is 1 chain in PDB entry 1MP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 414GLN 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1MP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
418 420Right-handed 310
Helix 2
2
A
461 477Right-handed alpha
Helix 3
3
A
507 514Right-handed alpha
Helix 4
4
A
519 540Right-handed alpha
Helix 5
5
A
548 550Right-handed 310
Helix 6
6
A
585 589Right-handed 310
Helix 7
7
A
590 597Right-handed alpha
Helix 8
8
A
600 617Right-handed alpha
Helix 9
9
A
627 629Right-handed 310
Helix 10
10
A
630 637Right-handed alpha
Helix 11
11
A
648 659Right-handed alpha
Helix 12
12
A
662 666Right-handed 310
Helix 13
13
A
668 686Right-handed alpha
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There are 2 sheets in PDB entry 1MP8. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 430first strand
Strand 2
A
435 441anti-parallel
Strand 3
A
449 455anti-parallel
Strand 4
A
496 500anti-parallel
Strand 5
A
486 490anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
552 556anti-parallel
Strand 3
A
559 562anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il