Analysis of interatomic Contacts of Structural Units in PDB entry:
1MP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MP9 entry

There are 2 chains in PDB entry 1MP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5GLU 197
B
 ILE 3VAL 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1MP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 37Right-handed alpha
Helix 2
2
A
76 94Right-handed alpha
Helix 3
3
A
120 128Right-handed alpha
Helix 4
4
A
167 185Right-handed alpha
Helix 5
5
B
29 37Right-handed alpha
Helix 6
6
B
76 94Right-handed alpha
Helix 7
7
B
120 128Right-handed alpha
Helix 8
8
B
167 185Right-handed alpha
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There are 4 sheets in PDB entry 1MP9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
12 23anti-parallel
Strand 5
A
103 114anti-parallel
Strand 6
A
159 165anti-parallel
Strand 7
A
150 154anti-parallel
Strand 8
A
141 145anti-parallel
Strand 9
A
131 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
188 189anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
59 63anti-parallel
Strand 3
B
68 72anti-parallel
Strand 4
B
12 23anti-parallel
Strand 5
B
103 114anti-parallel
Strand 6
B
159 165anti-parallel
Strand 7
B
150 154anti-parallel
Strand 8
B
141 145anti-parallel
Strand 9
B
131 132anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 119first strand
Strand 2
B
188 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il