Analysis of interatomic Contacts of Structural Units in PDB entry:
1MPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MPD entry

There is 1 chain in PDB entry 1MPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1MPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
43 53Right-handed alpha
Helix 3
3
A
64 72Right-handed 310
Helix 4
4
A
83 88Right-handed alpha
Helix 5
5
A
91 97Right-handed alpha
Helix 6
6
A
132 142Right-handed alpha
Helix 7
7
A
154 163Right-handed alpha
Helix 8
8
A
186 200Right-handed alpha
Helix 9
9
A
210 218Right-handed alpha
Helix 10
10
A
229 238Right-handed 310
Helix 11
11
A
273 282Right-handed alpha
Helix 12
12
A
287 296Right-handed alpha
Helix 13
13
A
305 313Right-handed alpha
Helix 14
14
A
315 326Right-handed alpha
Helix 15
15
A
334 352Right-handed 310
Helix 16
16
A
357 368Right-handed alpha
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There are 3 sheets in PDB entry 1MPD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
35 38parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
260 266anti-parallel
Strand 3
A
106 111anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
242 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il