Analysis of interatomic Contacts of Structural Units in PDB entry:
1MPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MPF entry

There is 1 chain in PDB entry 1MPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 1MPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
106 109Right-handed alpha
Helix 2
H2
A
198 201Right-handed alpha
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There are 3 sheets in PDB entry 1MPF. Click on sheet of interest to get list of strands forming it: A1, A2, B,

There are 16 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 23first strand
Strand 2
A
36 50anti-parallel
Strand 3
A
55 66anti-parallel
Strand 4
A
80 90anti-parallel
Strand 5
A
94 102anti-parallel
Strand 6
A
132 141anti-parallel
Strand 7
A
151 158anti-parallel
Strand 8
A
173 182anti-parallel
Strand 9
A
185 195anti-parallel
Strand 10
A
210 222anti-parallel
Strand 11
A
225 235anti-parallel
Strand 12
A
253 263anti-parallel
Strand 13
A
269 283anti-parallel
Strand 14
A
287 302anti-parallel
Strand 15
A
307 316anti-parallel
Strand 16
A
331 340anti-parallel
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There are 16 strands in A2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 23first strand
Strand 2
A
36 50anti-parallel
Strand 3
A
55 66anti-parallel
Strand 4
A
80 90anti-parallel
Strand 5
A
94 102anti-parallel
Strand 6
A
132 141anti-parallel
Strand 7
A
151 158anti-parallel
Strand 8
A
173 182anti-parallel
Strand 9
A
185 195anti-parallel
Strand 10
A
210 222anti-parallel
Strand 11
A
225 235anti-parallel
Strand 12
A
253 263anti-parallel
Strand 13
A
269 283anti-parallel
Strand 14
A
287 302anti-parallel
Strand 15
A
307 316anti-parallel
Strand 16
A
1 6anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il